Gene : Cagra.0133s0129 C. grandiflora v1.1
Defline:  (1 of 4) PTHR31375:SF37 - PECTIN LYASE-LIKE SUPERFAMILY PROTEIN-RELATED Genomic Order:  129
Name:  ? Cagra.0133s0129 Secondary Identifier:  ? PAC:28899401
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-1081 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0133s0129 0.5kb upstream 0.5kb upstream 2128 true Scaffold133: 474662-476789 Capsella grandiflora
Cagra.0133s0129 0.5kb upstream 0.5kb upstream 500 false Scaffold133: 476290-476789 Capsella grandiflora
Cagra.0133s0129 0.5kb downstream 0.5kb downstream 2128 true Scaffold133: 474162-476289 Capsella grandiflora
Cagra.0133s0129 0.5kb downstream 0.5kb downstream 500 false Scaffold133: 474162-474661 Capsella grandiflora
Cagra.0133s0129 1.0kb upstream 1.0kb upstream 2628 true Scaffold133: 474662-477289 Capsella grandiflora
Cagra.0133s0129 1.0kb upstream 1.0kb upstream 1000 false Scaffold133: 476290-477289 Capsella grandiflora
Cagra.0133s0129 1.0kb downstream 1.0kb downstream 2628 true Scaffold133: 473662-476289 Capsella grandiflora
Cagra.0133s0129 1.0kb downstream 1.0kb downstream 1000 false Scaffold133: 473662-474661 Capsella grandiflora
Cagra.0133s0129 2.0kb upstream 2.0kb upstream 3628 true Scaffold133: 474662-478289 Capsella grandiflora
Cagra.0133s0129 2.0kb upstream 2.0kb upstream 2000 false Scaffold133: 476290-478289 Capsella grandiflora
Cagra.0133s0129 2.0kb downstream 2.0kb downstream 3628 true Scaffold133: 472662-476289 Capsella grandiflora
Cagra.0133s0129 2.0kb downstream 2.0kb downstream 2000 false Scaffold133: 472662-474661 Capsella grandiflora
Cagra.0133s0129 5.0kb upstream 5.0kb upstream 6462 true Scaffold133: 474662-481123 Capsella grandiflora
Cagra.0133s0129 5.0kb upstream 5.0kb upstream 4834 false Scaffold133: 476290-481123 Capsella grandiflora
Cagra.0133s0129 5.0kb downstream 5.0kb downstream 6628 true Scaffold133: 469662-476289 Capsella grandiflora
Cagra.0133s0129 5.0kb downstream 5.0kb downstream 5000 false Scaffold133: 469662-474661 Capsella grandiflora
Cagra.0133s0129 10.0kb upstream 10.0kb upstream 6462 true Scaffold133: 474662-481123 Capsella grandiflora
Cagra.0133s0129 10.0kb upstream 10.0kb upstream 4834 false Scaffold133: 476290-481123 Capsella grandiflora
Cagra.0133s0129 10.0kb downstream 10.0kb downstream 11628 true Scaffold133: 464662-476289 Capsella grandiflora
Cagra.0133s0129 10.0kb downstream 10.0kb downstream 10000 false Scaffold133: 464662-474661 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122338746 5261 Brassicaceae View MSA
123779295 5264 Brassicales-Malvales View MSA
124349703 5266 SBM View MSA
124252748 5268 Malvidae View MSA
124074380 5270 Rosid View MSA
123753570 5271 Pentapetalae View MSA
122797497 5272 Eudicot View MSA
122051291 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain