Gene : Cagra.0147s0010 C. grandiflora v1.1
Defline:  (1 of 1) PTHR23344:SF28 - GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE 1 Genomic Order:  10
Name:  ? Cagra.0147s0010 Secondary Identifier:  ? PAC:28896379
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-7409 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0147s0010 0.5kb upstream 0.5kb upstream 2313 true Scaffold147: 32153-34465 Capsella grandiflora
Cagra.0147s0010 0.5kb upstream 0.5kb upstream 500 false Scaffold147: 32153-32652 Capsella grandiflora
Cagra.0147s0010 0.5kb downstream 0.5kb downstream 2313 true Scaffold147: 32653-34965 Capsella grandiflora
Cagra.0147s0010 0.5kb downstream 0.5kb downstream 500 false Scaffold147: 34466-34965 Capsella grandiflora
Cagra.0147s0010 1.0kb upstream 1.0kb upstream 2813 true Scaffold147: 31653-34465 Capsella grandiflora
Cagra.0147s0010 1.0kb upstream 1.0kb upstream 1000 false Scaffold147: 31653-32652 Capsella grandiflora
Cagra.0147s0010 1.0kb downstream 1.0kb downstream 2813 true Scaffold147: 32653-35465 Capsella grandiflora
Cagra.0147s0010 1.0kb downstream 1.0kb downstream 1000 false Scaffold147: 34466-35465 Capsella grandiflora
Cagra.0147s0010 2.0kb upstream 2.0kb upstream 3813 true Scaffold147: 30653-34465 Capsella grandiflora
Cagra.0147s0010 2.0kb upstream 2.0kb upstream 2000 false Scaffold147: 30653-32652 Capsella grandiflora
Cagra.0147s0010 2.0kb downstream 2.0kb downstream 3813 true Scaffold147: 32653-36465 Capsella grandiflora
Cagra.0147s0010 2.0kb downstream 2.0kb downstream 2000 false Scaffold147: 34466-36465 Capsella grandiflora
Cagra.0147s0010 5.0kb upstream 5.0kb upstream 6813 true Scaffold147: 27653-34465 Capsella grandiflora
Cagra.0147s0010 5.0kb upstream 5.0kb upstream 5000 false Scaffold147: 27653-32652 Capsella grandiflora
Cagra.0147s0010 5.0kb downstream 5.0kb downstream 6813 true Scaffold147: 32653-39465 Capsella grandiflora
Cagra.0147s0010 5.0kb downstream 5.0kb downstream 5000 false Scaffold147: 34466-39465 Capsella grandiflora
Cagra.0147s0010 10.0kb upstream 10.0kb upstream 11813 true Scaffold147: 22653-34465 Capsella grandiflora
Cagra.0147s0010 10.0kb upstream 10.0kb upstream 10000 false Scaffold147: 22653-32652 Capsella grandiflora
Cagra.0147s0010 10.0kb downstream 10.0kb downstream 11813 true Scaffold147: 32653-44465 Capsella grandiflora
Cagra.0147s0010 10.0kb downstream 10.0kb downstream 10000 false Scaffold147: 34466-44465 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367757 5261 Brassicaceae View MSA
123834207 5264 Brassicales-Malvales View MSA
124341346 5266 SBM View MSA
124240087 5268 Malvidae View MSA
124067594 5270 Rosid View MSA
123739367 5271 Pentapetalae View MSA
122793263 5272 Eudicot View MSA
122047219 5273 Angiosperm View MSA
121349016 5274 Embryophyte View MSA
123427418 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain