Gene : Cagra.0147s0042 C. grandiflora v1.1
Defline:  (1 of 2) PTHR23315:SF52 - U-BOX DOMAIN-CONTAINING PROTEIN 10-RELATED Genomic Order:  42
Name:  ? Cagra.0147s0042 Secondary Identifier:  ? PAC:28896370
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-7511 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0147s0042 0.5kb upstream 0.5kb upstream 3057 true Scaffold147: 151848-154904 Capsella grandiflora
Cagra.0147s0042 0.5kb upstream 0.5kb upstream 500 false Scaffold147: 151848-152347 Capsella grandiflora
Cagra.0147s0042 0.5kb downstream 0.5kb downstream 3057 true Scaffold147: 152348-155404 Capsella grandiflora
Cagra.0147s0042 0.5kb downstream 0.5kb downstream 500 false Scaffold147: 154905-155404 Capsella grandiflora
Cagra.0147s0042 1.0kb upstream 1.0kb upstream 3557 true Scaffold147: 151348-154904 Capsella grandiflora
Cagra.0147s0042 1.0kb upstream 1.0kb upstream 1000 false Scaffold147: 151348-152347 Capsella grandiflora
Cagra.0147s0042 1.0kb downstream 1.0kb downstream 3557 true Scaffold147: 152348-155904 Capsella grandiflora
Cagra.0147s0042 1.0kb downstream 1.0kb downstream 1000 false Scaffold147: 154905-155904 Capsella grandiflora
Cagra.0147s0042 2.0kb upstream 2.0kb upstream 4557 true Scaffold147: 150348-154904 Capsella grandiflora
Cagra.0147s0042 2.0kb upstream 2.0kb upstream 2000 false Scaffold147: 150348-152347 Capsella grandiflora
Cagra.0147s0042 2.0kb downstream 2.0kb downstream 4557 true Scaffold147: 152348-156904 Capsella grandiflora
Cagra.0147s0042 2.0kb downstream 2.0kb downstream 2000 false Scaffold147: 154905-156904 Capsella grandiflora
Cagra.0147s0042 5.0kb upstream 5.0kb upstream 7557 true Scaffold147: 147348-154904 Capsella grandiflora
Cagra.0147s0042 5.0kb upstream 5.0kb upstream 5000 false Scaffold147: 147348-152347 Capsella grandiflora
Cagra.0147s0042 5.0kb downstream 5.0kb downstream 7557 true Scaffold147: 152348-159904 Capsella grandiflora
Cagra.0147s0042 5.0kb downstream 5.0kb downstream 5000 false Scaffold147: 154905-159904 Capsella grandiflora
Cagra.0147s0042 10.0kb upstream 10.0kb upstream 12557 true Scaffold147: 142348-154904 Capsella grandiflora
Cagra.0147s0042 10.0kb upstream 10.0kb upstream 10000 false Scaffold147: 142348-152347 Capsella grandiflora
Cagra.0147s0042 10.0kb downstream 10.0kb downstream 12557 true Scaffold147: 152348-164904 Capsella grandiflora
Cagra.0147s0042 10.0kb downstream 10.0kb downstream 10000 false Scaffold147: 154905-164904 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371158 5261 Brassicaceae View MSA
123835937 5264 Brassicales-Malvales View MSA
124339411 5266 SBM View MSA
124237538 5268 Malvidae View MSA
124062819 5270 Rosid View MSA
123743592 5271 Pentapetalae View MSA
122789387 5272 Eudicot View MSA
122050659 5273 Angiosperm View MSA
121312051 5274 Embryophyte View MSA
123428864 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain