Gene : Cagra.0133s0041 C. grandiflora v1.1
Defline:  (1 of 3) PF00564//PF03108//PF04434//PF10551 - PB1 domain (PB1) // MuDR family transposase (DBD_Tnp_Mut) // SWIM zinc finger (SWIM) // MULE transposase domain (MULE) Genomic Order:  41
Name:  ? Cagra.0133s0041 Secondary Identifier:  ? PAC:28899471
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0133s0041 0.5kb upstream 0.5kb upstream 3522 true Scaffold133: 158237-161758 Capsella grandiflora
Cagra.0133s0041 0.5kb upstream 0.5kb upstream 500 false Scaffold133: 161259-161758 Capsella grandiflora
Cagra.0133s0041 0.5kb downstream 0.5kb downstream 3522 true Scaffold133: 157737-161258 Capsella grandiflora
Cagra.0133s0041 0.5kb downstream 0.5kb downstream 500 false Scaffold133: 157737-158236 Capsella grandiflora
Cagra.0133s0041 1.0kb upstream 1.0kb upstream 4022 true Scaffold133: 158237-162258 Capsella grandiflora
Cagra.0133s0041 1.0kb upstream 1.0kb upstream 1000 false Scaffold133: 161259-162258 Capsella grandiflora
Cagra.0133s0041 1.0kb downstream 1.0kb downstream 4022 true Scaffold133: 157237-161258 Capsella grandiflora
Cagra.0133s0041 1.0kb downstream 1.0kb downstream 1000 false Scaffold133: 157237-158236 Capsella grandiflora
Cagra.0133s0041 2.0kb upstream 2.0kb upstream 5022 true Scaffold133: 158237-163258 Capsella grandiflora
Cagra.0133s0041 2.0kb upstream 2.0kb upstream 2000 false Scaffold133: 161259-163258 Capsella grandiflora
Cagra.0133s0041 2.0kb downstream 2.0kb downstream 5022 true Scaffold133: 156237-161258 Capsella grandiflora
Cagra.0133s0041 2.0kb downstream 2.0kb downstream 2000 false Scaffold133: 156237-158236 Capsella grandiflora
Cagra.0133s0041 5.0kb upstream 5.0kb upstream 8022 true Scaffold133: 158237-166258 Capsella grandiflora
Cagra.0133s0041 5.0kb upstream 5.0kb upstream 5000 false Scaffold133: 161259-166258 Capsella grandiflora
Cagra.0133s0041 5.0kb downstream 5.0kb downstream 8022 true Scaffold133: 153237-161258 Capsella grandiflora
Cagra.0133s0041 5.0kb downstream 5.0kb downstream 5000 false Scaffold133: 153237-158236 Capsella grandiflora
Cagra.0133s0041 10.0kb upstream 10.0kb upstream 13022 true Scaffold133: 158237-171258 Capsella grandiflora
Cagra.0133s0041 10.0kb upstream 10.0kb upstream 10000 false Scaffold133: 161259-171258 Capsella grandiflora
Cagra.0133s0041 10.0kb downstream 10.0kb downstream 13022 true Scaffold133: 148237-161258 Capsella grandiflora
Cagra.0133s0041 10.0kb downstream 10.0kb downstream 10000 false Scaffold133: 148237-158236 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367644 5261 Brassicaceae View MSA
123837837 5264 Brassicales-Malvales View MSA
124339946 5266 SBM View MSA
124239535 5268 Malvidae View MSA
124072231 5270 Rosid View MSA
123753345 5271 Pentapetalae View MSA
122797917 5272 Eudicot View MSA
122051679 5273 Angiosperm View MSA
121351767 5274 Embryophyte View MSA
123382313 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain