Gene : Cagra.0114s0072 C. grandiflora v1.1
Defline:  (1 of 2) PTHR23160:SF3 - SYNAPTONEMAL COMPLEX PROTEIN 1-RELATED Genomic Order:  72
Name:  ? Cagra.0114s0072 Secondary Identifier:  ? PAC:28915803
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0114s0072 0.5kb upstream 0.5kb upstream 6173 true Scaffold114: 277776-283948 Capsella grandiflora
Cagra.0114s0072 0.5kb upstream 0.5kb upstream 500 false Scaffold114: 283449-283948 Capsella grandiflora
Cagra.0114s0072 0.5kb downstream 0.5kb downstream 6173 true Scaffold114: 277276-283448 Capsella grandiflora
Cagra.0114s0072 0.5kb downstream 0.5kb downstream 500 false Scaffold114: 277276-277775 Capsella grandiflora
Cagra.0114s0072 1.0kb upstream 1.0kb upstream 6673 true Scaffold114: 277776-284448 Capsella grandiflora
Cagra.0114s0072 1.0kb upstream 1.0kb upstream 1000 false Scaffold114: 283449-284448 Capsella grandiflora
Cagra.0114s0072 1.0kb downstream 1.0kb downstream 6673 true Scaffold114: 276776-283448 Capsella grandiflora
Cagra.0114s0072 1.0kb downstream 1.0kb downstream 1000 false Scaffold114: 276776-277775 Capsella grandiflora
Cagra.0114s0072 2.0kb upstream 2.0kb upstream 7673 true Scaffold114: 277776-285448 Capsella grandiflora
Cagra.0114s0072 2.0kb upstream 2.0kb upstream 2000 false Scaffold114: 283449-285448 Capsella grandiflora
Cagra.0114s0072 2.0kb downstream 2.0kb downstream 7673 true Scaffold114: 275776-283448 Capsella grandiflora
Cagra.0114s0072 2.0kb downstream 2.0kb downstream 2000 false Scaffold114: 275776-277775 Capsella grandiflora
Cagra.0114s0072 5.0kb upstream 5.0kb upstream 10673 true Scaffold114: 277776-288448 Capsella grandiflora
Cagra.0114s0072 5.0kb upstream 5.0kb upstream 5000 false Scaffold114: 283449-288448 Capsella grandiflora
Cagra.0114s0072 5.0kb downstream 5.0kb downstream 10673 true Scaffold114: 272776-283448 Capsella grandiflora
Cagra.0114s0072 5.0kb downstream 5.0kb downstream 5000 false Scaffold114: 272776-277775 Capsella grandiflora
Cagra.0114s0072 10.0kb upstream 10.0kb upstream 15673 true Scaffold114: 277776-293448 Capsella grandiflora
Cagra.0114s0072 10.0kb upstream 10.0kb upstream 10000 false Scaffold114: 283449-293448 Capsella grandiflora
Cagra.0114s0072 10.0kb downstream 10.0kb downstream 15673 true Scaffold114: 267776-283448 Capsella grandiflora
Cagra.0114s0072 10.0kb downstream 10.0kb downstream 10000 false Scaffold114: 267776-277775 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375456 5261 Brassicaceae View MSA
123833019 5264 Brassicales-Malvales View MSA
124345606 5266 SBM View MSA
124238407 5268 Malvidae View MSA
124068908 5270 Rosid View MSA
123737284 5271 Pentapetalae View MSA
122789700 5272 Eudicot View MSA
122042808 5273 Angiosperm View MSA
121349481 5274 Embryophyte View MSA
123381327 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain