Gene : Cagra.0104s0024 C. grandiflora v1.1
Defline:  (1 of 2) 4.2.1.113 - o-succinylbenzoate synthase / OSBS Genomic Order:  24
Name:  ? Cagra.0104s0024 Secondary Identifier:  ? PAC:28906206
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-5837 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0104s0024 0.5kb upstream 0.5kb upstream 2510 true Scaffold104: 74350-76859 Capsella grandiflora
Cagra.0104s0024 0.5kb upstream 0.5kb upstream 500 false Scaffold104: 74350-74849 Capsella grandiflora
Cagra.0104s0024 0.5kb downstream 0.5kb downstream 2510 true Scaffold104: 74850-77359 Capsella grandiflora
Cagra.0104s0024 0.5kb downstream 0.5kb downstream 500 false Scaffold104: 76860-77359 Capsella grandiflora
Cagra.0104s0024 1.0kb upstream 1.0kb upstream 3010 true Scaffold104: 73850-76859 Capsella grandiflora
Cagra.0104s0024 1.0kb upstream 1.0kb upstream 1000 false Scaffold104: 73850-74849 Capsella grandiflora
Cagra.0104s0024 1.0kb downstream 1.0kb downstream 3010 true Scaffold104: 74850-77859 Capsella grandiflora
Cagra.0104s0024 1.0kb downstream 1.0kb downstream 1000 false Scaffold104: 76860-77859 Capsella grandiflora
Cagra.0104s0024 2.0kb upstream 2.0kb upstream 4010 true Scaffold104: 72850-76859 Capsella grandiflora
Cagra.0104s0024 2.0kb upstream 2.0kb upstream 2000 false Scaffold104: 72850-74849 Capsella grandiflora
Cagra.0104s0024 2.0kb downstream 2.0kb downstream 4010 true Scaffold104: 74850-78859 Capsella grandiflora
Cagra.0104s0024 2.0kb downstream 2.0kb downstream 2000 false Scaffold104: 76860-78859 Capsella grandiflora
Cagra.0104s0024 5.0kb upstream 5.0kb upstream 7010 true Scaffold104: 69850-76859 Capsella grandiflora
Cagra.0104s0024 5.0kb upstream 5.0kb upstream 5000 false Scaffold104: 69850-74849 Capsella grandiflora
Cagra.0104s0024 5.0kb downstream 5.0kb downstream 7010 true Scaffold104: 74850-81859 Capsella grandiflora
Cagra.0104s0024 5.0kb downstream 5.0kb downstream 5000 false Scaffold104: 76860-81859 Capsella grandiflora
Cagra.0104s0024 10.0kb upstream 10.0kb upstream 12010 true Scaffold104: 64850-76859 Capsella grandiflora
Cagra.0104s0024 10.0kb upstream 10.0kb upstream 10000 false Scaffold104: 64850-74849 Capsella grandiflora
Cagra.0104s0024 10.0kb downstream 10.0kb downstream 12010 true Scaffold104: 74850-86859 Capsella grandiflora
Cagra.0104s0024 10.0kb downstream 10.0kb downstream 10000 false Scaffold104: 76860-86859 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369123 5261 Brassicaceae View MSA
123827688 5264 Brassicales-Malvales View MSA
124344959 5266 SBM View MSA
124241763 5268 Malvidae View MSA
124068265 5270 Rosid View MSA
123736844 5271 Pentapetalae View MSA
122793811 5272 Eudicot View MSA
122046477 5273 Angiosperm View MSA
121344222 5274 Embryophyte View MSA
123380007 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain