Gene : Cagra.0096s0025 C. grandiflora v1.1
Defline:  (1 of 1) PTHR23083//PTHR23083:SF429 - TETRATRICOPEPTIDE REPEAT PROTEIN, TPR Genomic Order:  25
Name:  ? Cagra.0096s0025 Secondary Identifier:  ? PAC:28897001
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0096s0025 0.5kb upstream 0.5kb upstream 2771 true Scaffold96: 101532-104302 Capsella grandiflora
Cagra.0096s0025 0.5kb upstream 0.5kb upstream 500 false Scaffold96: 101532-102031 Capsella grandiflora
Cagra.0096s0025 0.5kb downstream 0.5kb downstream 2771 true Scaffold96: 102032-104802 Capsella grandiflora
Cagra.0096s0025 0.5kb downstream 0.5kb downstream 500 false Scaffold96: 104303-104802 Capsella grandiflora
Cagra.0096s0025 1.0kb upstream 1.0kb upstream 3271 true Scaffold96: 101032-104302 Capsella grandiflora
Cagra.0096s0025 1.0kb upstream 1.0kb upstream 1000 false Scaffold96: 101032-102031 Capsella grandiflora
Cagra.0096s0025 1.0kb downstream 1.0kb downstream 3271 true Scaffold96: 102032-105302 Capsella grandiflora
Cagra.0096s0025 1.0kb downstream 1.0kb downstream 1000 false Scaffold96: 104303-105302 Capsella grandiflora
Cagra.0096s0025 2.0kb upstream 2.0kb upstream 4271 true Scaffold96: 100032-104302 Capsella grandiflora
Cagra.0096s0025 2.0kb upstream 2.0kb upstream 2000 false Scaffold96: 100032-102031 Capsella grandiflora
Cagra.0096s0025 2.0kb downstream 2.0kb downstream 4271 true Scaffold96: 102032-106302 Capsella grandiflora
Cagra.0096s0025 2.0kb downstream 2.0kb downstream 2000 false Scaffold96: 104303-106302 Capsella grandiflora
Cagra.0096s0025 5.0kb upstream 5.0kb upstream 7271 true Scaffold96: 97032-104302 Capsella grandiflora
Cagra.0096s0025 5.0kb upstream 5.0kb upstream 5000 false Scaffold96: 97032-102031 Capsella grandiflora
Cagra.0096s0025 5.0kb downstream 5.0kb downstream 7271 true Scaffold96: 102032-109302 Capsella grandiflora
Cagra.0096s0025 5.0kb downstream 5.0kb downstream 5000 false Scaffold96: 104303-109302 Capsella grandiflora
Cagra.0096s0025 10.0kb upstream 10.0kb upstream 12271 true Scaffold96: 92032-104302 Capsella grandiflora
Cagra.0096s0025 10.0kb upstream 10.0kb upstream 10000 false Scaffold96: 92032-102031 Capsella grandiflora
Cagra.0096s0025 10.0kb downstream 10.0kb downstream 12271 true Scaffold96: 102032-114302 Capsella grandiflora
Cagra.0096s0025 10.0kb downstream 10.0kb downstream 10000 false Scaffold96: 104303-114302 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364744 5261 Brassicaceae View MSA
123836984 5264 Brassicales-Malvales View MSA
124348383 5266 SBM View MSA
124245987 5268 Malvidae View MSA
124069860 5270 Rosid View MSA
123742749 5271 Pentapetalae View MSA
122798057 5272 Eudicot View MSA
122047040 5273 Angiosperm View MSA
121310683 5274 Embryophyte View MSA
123348108 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain