Gene : Cagra.0090s0024 C. grandiflora v1.1
Defline:  (1 of 2) PTHR11709:SF93 - LACCASE-10-RELATED Genomic Order:  24
Name:  ? Cagra.0090s0024 Secondary Identifier:  ? PAC:28902670
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-5466 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0090s0024 0.5kb upstream 0.5kb upstream 3771 true Scaffold90: 88049-91819 Capsella grandiflora
Cagra.0090s0024 0.5kb upstream 0.5kb upstream 500 false Scaffold90: 88049-88548 Capsella grandiflora
Cagra.0090s0024 0.5kb downstream 0.5kb downstream 3771 true Scaffold90: 88549-92319 Capsella grandiflora
Cagra.0090s0024 0.5kb downstream 0.5kb downstream 500 false Scaffold90: 91820-92319 Capsella grandiflora
Cagra.0090s0024 1.0kb upstream 1.0kb upstream 4271 true Scaffold90: 87549-91819 Capsella grandiflora
Cagra.0090s0024 1.0kb upstream 1.0kb upstream 1000 false Scaffold90: 87549-88548 Capsella grandiflora
Cagra.0090s0024 1.0kb downstream 1.0kb downstream 4271 true Scaffold90: 88549-92819 Capsella grandiflora
Cagra.0090s0024 1.0kb downstream 1.0kb downstream 1000 false Scaffold90: 91820-92819 Capsella grandiflora
Cagra.0090s0024 2.0kb upstream 2.0kb upstream 5271 true Scaffold90: 86549-91819 Capsella grandiflora
Cagra.0090s0024 2.0kb upstream 2.0kb upstream 2000 false Scaffold90: 86549-88548 Capsella grandiflora
Cagra.0090s0024 2.0kb downstream 2.0kb downstream 5271 true Scaffold90: 88549-93819 Capsella grandiflora
Cagra.0090s0024 2.0kb downstream 2.0kb downstream 2000 false Scaffold90: 91820-93819 Capsella grandiflora
Cagra.0090s0024 5.0kb upstream 5.0kb upstream 8271 true Scaffold90: 83549-91819 Capsella grandiflora
Cagra.0090s0024 5.0kb upstream 5.0kb upstream 5000 false Scaffold90: 83549-88548 Capsella grandiflora
Cagra.0090s0024 5.0kb downstream 5.0kb downstream 8271 true Scaffold90: 88549-96819 Capsella grandiflora
Cagra.0090s0024 5.0kb downstream 5.0kb downstream 5000 false Scaffold90: 91820-96819 Capsella grandiflora
Cagra.0090s0024 10.0kb upstream 10.0kb upstream 13271 true Scaffold90: 78549-91819 Capsella grandiflora
Cagra.0090s0024 10.0kb upstream 10.0kb upstream 10000 false Scaffold90: 78549-88548 Capsella grandiflora
Cagra.0090s0024 10.0kb downstream 10.0kb downstream 13271 true Scaffold90: 88549-101819 Capsella grandiflora
Cagra.0090s0024 10.0kb downstream 10.0kb downstream 10000 false Scaffold90: 91820-101819 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373955 5261 Brassicaceae View MSA
123833557 5264 Brassicales-Malvales View MSA
124351292 5266 SBM View MSA
124253766 5268 Malvidae View MSA
124069794 5270 Rosid View MSA
123752484 5271 Pentapetalae View MSA
122797198 5272 Eudicot View MSA
122050716 5273 Angiosperm View MSA
121350155 5274 Embryophyte View MSA
123428014 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain