Gene : Cagra.0277s0004 C. grandiflora v1.1
Defline:  (1 of 5) PTHR31500:SF18 - AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN-RELATED Genomic Order:  4
Name:  ? Cagra.0277s0004 Secondary Identifier:  ? PAC:28911277
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0277s0004 0.5kb upstream 0.5kb upstream 2914 true Scaffold277: 12043-14956 Capsella grandiflora
Cagra.0277s0004 0.5kb upstream 0.5kb upstream 500 false Scaffold277: 14457-14956 Capsella grandiflora
Cagra.0277s0004 0.5kb downstream 0.5kb downstream 2914 true Scaffold277: 11543-14456 Capsella grandiflora
Cagra.0277s0004 0.5kb downstream 0.5kb downstream 500 false Scaffold277: 11543-12042 Capsella grandiflora
Cagra.0277s0004 1.0kb upstream 1.0kb upstream 3414 true Scaffold277: 12043-15456 Capsella grandiflora
Cagra.0277s0004 1.0kb upstream 1.0kb upstream 1000 false Scaffold277: 14457-15456 Capsella grandiflora
Cagra.0277s0004 1.0kb downstream 1.0kb downstream 3414 true Scaffold277: 11043-14456 Capsella grandiflora
Cagra.0277s0004 1.0kb downstream 1.0kb downstream 1000 false Scaffold277: 11043-12042 Capsella grandiflora
Cagra.0277s0004 2.0kb upstream 2.0kb upstream 4414 true Scaffold277: 12043-16456 Capsella grandiflora
Cagra.0277s0004 2.0kb upstream 2.0kb upstream 2000 false Scaffold277: 14457-16456 Capsella grandiflora
Cagra.0277s0004 2.0kb downstream 2.0kb downstream 4414 true Scaffold277: 10043-14456 Capsella grandiflora
Cagra.0277s0004 2.0kb downstream 2.0kb downstream 2000 false Scaffold277: 10043-12042 Capsella grandiflora
Cagra.0277s0004 5.0kb upstream 5.0kb upstream 7414 true Scaffold277: 12043-19456 Capsella grandiflora
Cagra.0277s0004 5.0kb upstream 5.0kb upstream 5000 false Scaffold277: 14457-19456 Capsella grandiflora
Cagra.0277s0004 5.0kb downstream 5.0kb downstream 7414 true Scaffold277: 7043-14456 Capsella grandiflora
Cagra.0277s0004 5.0kb downstream 5.0kb downstream 5000 false Scaffold277: 7043-12042 Capsella grandiflora
Cagra.0277s0004 10.0kb upstream 10.0kb upstream 12414 true Scaffold277: 12043-24456 Capsella grandiflora
Cagra.0277s0004 10.0kb upstream 10.0kb upstream 10000 false Scaffold277: 14457-24456 Capsella grandiflora
Cagra.0277s0004 10.0kb downstream 10.0kb downstream 12414 true Scaffold277: 2043-14456 Capsella grandiflora
Cagra.0277s0004 10.0kb downstream 10.0kb downstream 10000 false Scaffold277: 2043-12042 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362462 5261 Brassicaceae View MSA
123836603 5264 Brassicales-Malvales View MSA
124340657 5266 SBM View MSA
124251241 5268 Malvidae View MSA
124071035 5270 Rosid View MSA
123753724 5271 Pentapetalae View MSA
122796118 5272 Eudicot View MSA
122049850 5273 Angiosperm View MSA
121348420 5274 Embryophyte View MSA
123380859 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain