Gene : Cagra.0248s0085 C. grandiflora v1.1
Defline:  (1 of 1) PTHR36814:SF1 - PHOTOSYSTEM I REACTION CENTER SUBUNIT N, CHLOROPLASTIC Genomic Order:  85
Name:  ? Cagra.0248s0085 Secondary Identifier:  ? PAC:28918922
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PHOTOALL-PWY Capsella grandiflora pathologic  
Cgrandiflora PWY-101 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0248s0085 0.5kb upstream 0.5kb upstream 1392 true Scaffold248: 304256-305647 Capsella grandiflora
Cagra.0248s0085 0.5kb upstream 0.5kb upstream 500 false Scaffold248: 305148-305647 Capsella grandiflora
Cagra.0248s0085 0.5kb downstream 0.5kb downstream 1392 true Scaffold248: 303756-305147 Capsella grandiflora
Cagra.0248s0085 0.5kb downstream 0.5kb downstream 500 false Scaffold248: 303756-304255 Capsella grandiflora
Cagra.0248s0085 1.0kb upstream 1.0kb upstream 1892 true Scaffold248: 304256-306147 Capsella grandiflora
Cagra.0248s0085 1.0kb upstream 1.0kb upstream 1000 false Scaffold248: 305148-306147 Capsella grandiflora
Cagra.0248s0085 1.0kb downstream 1.0kb downstream 1892 true Scaffold248: 303256-305147 Capsella grandiflora
Cagra.0248s0085 1.0kb downstream 1.0kb downstream 1000 false Scaffold248: 303256-304255 Capsella grandiflora
Cagra.0248s0085 2.0kb upstream 2.0kb upstream 2892 true Scaffold248: 304256-307147 Capsella grandiflora
Cagra.0248s0085 2.0kb upstream 2.0kb upstream 2000 false Scaffold248: 305148-307147 Capsella grandiflora
Cagra.0248s0085 2.0kb downstream 2.0kb downstream 2892 true Scaffold248: 302256-305147 Capsella grandiflora
Cagra.0248s0085 2.0kb downstream 2.0kb downstream 2000 false Scaffold248: 302256-304255 Capsella grandiflora
Cagra.0248s0085 5.0kb upstream 5.0kb upstream 5892 true Scaffold248: 304256-310147 Capsella grandiflora
Cagra.0248s0085 5.0kb upstream 5.0kb upstream 5000 false Scaffold248: 305148-310147 Capsella grandiflora
Cagra.0248s0085 5.0kb downstream 5.0kb downstream 5892 true Scaffold248: 299256-305147 Capsella grandiflora
Cagra.0248s0085 5.0kb downstream 5.0kb downstream 5000 false Scaffold248: 299256-304255 Capsella grandiflora
Cagra.0248s0085 10.0kb upstream 10.0kb upstream 10892 true Scaffold248: 304256-315147 Capsella grandiflora
Cagra.0248s0085 10.0kb upstream 10.0kb upstream 10000 false Scaffold248: 305148-315147 Capsella grandiflora
Cagra.0248s0085 10.0kb downstream 10.0kb downstream 10892 true Scaffold248: 294256-305147 Capsella grandiflora
Cagra.0248s0085 10.0kb downstream 10.0kb downstream 10000 false Scaffold248: 294256-304255 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379463 5261 Brassicaceae View MSA
123830230 5264 Brassicales-Malvales View MSA
124345790 5266 SBM View MSA
124247840 5268 Malvidae View MSA
124061914 5270 Rosid View MSA
123739503 5271 Pentapetalae View MSA
122786700 5272 Eudicot View MSA
122046387 5273 Angiosperm View MSA
121346900 5274 Embryophyte View MSA
123425334 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain