Gene : Cagra.0248s0111 C. grandiflora v1.1
Defline:  (1 of 1) 3.5.4.25//4.1.99.12 - 3,4-dihydroxy-2-butanone-4-phosphate synthase / L-3,4-dihydroxybutan-2-one-4-phosphate synthase Genomic Order:  111
Name:  ? Cagra.0248s0111 Secondary Identifier:  ? PAC:28918821
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora RIBOSYN2-PWY Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0248s0111 0.5kb upstream 0.5kb upstream 3442 true Scaffold248: 395889-399330 Capsella grandiflora
Cagra.0248s0111 0.5kb upstream 0.5kb upstream 500 false Scaffold248: 395889-396388 Capsella grandiflora
Cagra.0248s0111 0.5kb downstream 0.5kb downstream 3442 true Scaffold248: 396389-399830 Capsella grandiflora
Cagra.0248s0111 0.5kb downstream 0.5kb downstream 500 false Scaffold248: 399331-399830 Capsella grandiflora
Cagra.0248s0111 1.0kb upstream 1.0kb upstream 3942 true Scaffold248: 395389-399330 Capsella grandiflora
Cagra.0248s0111 1.0kb upstream 1.0kb upstream 1000 false Scaffold248: 395389-396388 Capsella grandiflora
Cagra.0248s0111 1.0kb downstream 1.0kb downstream 3942 true Scaffold248: 396389-400330 Capsella grandiflora
Cagra.0248s0111 1.0kb downstream 1.0kb downstream 1000 false Scaffold248: 399331-400330 Capsella grandiflora
Cagra.0248s0111 2.0kb upstream 2.0kb upstream 4942 true Scaffold248: 394389-399330 Capsella grandiflora
Cagra.0248s0111 2.0kb upstream 2.0kb upstream 2000 false Scaffold248: 394389-396388 Capsella grandiflora
Cagra.0248s0111 2.0kb downstream 2.0kb downstream 4942 true Scaffold248: 396389-401330 Capsella grandiflora
Cagra.0248s0111 2.0kb downstream 2.0kb downstream 2000 false Scaffold248: 399331-401330 Capsella grandiflora
Cagra.0248s0111 5.0kb upstream 5.0kb upstream 7942 true Scaffold248: 391389-399330 Capsella grandiflora
Cagra.0248s0111 5.0kb upstream 5.0kb upstream 5000 false Scaffold248: 391389-396388 Capsella grandiflora
Cagra.0248s0111 5.0kb downstream 5.0kb downstream 7942 true Scaffold248: 396389-404330 Capsella grandiflora
Cagra.0248s0111 5.0kb downstream 5.0kb downstream 5000 false Scaffold248: 399331-404330 Capsella grandiflora
Cagra.0248s0111 10.0kb upstream 10.0kb upstream 12942 true Scaffold248: 386389-399330 Capsella grandiflora
Cagra.0248s0111 10.0kb upstream 10.0kb upstream 10000 false Scaffold248: 386389-396388 Capsella grandiflora
Cagra.0248s0111 10.0kb downstream 10.0kb downstream 12942 true Scaffold248: 396389-409330 Capsella grandiflora
Cagra.0248s0111 10.0kb downstream 10.0kb downstream 10000 false Scaffold248: 399331-409330 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041066 5273 Angiosperm View MSA
122374367 5261 Brassicaceae View MSA
123828397 5264 Brassicales-Malvales View MSA
124340987 5266 SBM View MSA
124248360 5268 Malvidae View MSA
124067680 5270 Rosid View MSA
123753464 5271 Pentapetalae View MSA
122788466 5272 Eudicot View MSA
121346573 5274 Embryophyte View MSA
123428678 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain