Gene : Cagra.0248s0086 C. grandiflora v1.1
Defline:  (1 of 4) 6.1.1.17 - Glutamate--tRNA ligase / Glutamyl-tRNA synthetase Genomic Order:  86
Name:  ? Cagra.0248s0086 Secondary Identifier:  ? PAC:28918834
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-5188 Capsella grandiflora pathologic  
Cgrandiflora PWY-5918 Capsella grandiflora pathologic  
Cgrandiflora TRNA-CHARGING-PWY Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0248s0086 0.5kb upstream 0.5kb upstream 3754 true Scaffold248: 305538-309291 Capsella grandiflora
Cagra.0248s0086 0.5kb upstream 0.5kb upstream 500 false Scaffold248: 308792-309291 Capsella grandiflora
Cagra.0248s0086 0.5kb downstream 0.5kb downstream 3754 true Scaffold248: 305038-308791 Capsella grandiflora
Cagra.0248s0086 0.5kb downstream 0.5kb downstream 500 false Scaffold248: 305038-305537 Capsella grandiflora
Cagra.0248s0086 1.0kb upstream 1.0kb upstream 4254 true Scaffold248: 305538-309791 Capsella grandiflora
Cagra.0248s0086 1.0kb upstream 1.0kb upstream 1000 false Scaffold248: 308792-309791 Capsella grandiflora
Cagra.0248s0086 1.0kb downstream 1.0kb downstream 4254 true Scaffold248: 304538-308791 Capsella grandiflora
Cagra.0248s0086 1.0kb downstream 1.0kb downstream 1000 false Scaffold248: 304538-305537 Capsella grandiflora
Cagra.0248s0086 2.0kb upstream 2.0kb upstream 5254 true Scaffold248: 305538-310791 Capsella grandiflora
Cagra.0248s0086 2.0kb upstream 2.0kb upstream 2000 false Scaffold248: 308792-310791 Capsella grandiflora
Cagra.0248s0086 2.0kb downstream 2.0kb downstream 5254 true Scaffold248: 303538-308791 Capsella grandiflora
Cagra.0248s0086 2.0kb downstream 2.0kb downstream 2000 false Scaffold248: 303538-305537 Capsella grandiflora
Cagra.0248s0086 5.0kb upstream 5.0kb upstream 8254 true Scaffold248: 305538-313791 Capsella grandiflora
Cagra.0248s0086 5.0kb upstream 5.0kb upstream 5000 false Scaffold248: 308792-313791 Capsella grandiflora
Cagra.0248s0086 5.0kb downstream 5.0kb downstream 8254 true Scaffold248: 300538-308791 Capsella grandiflora
Cagra.0248s0086 5.0kb downstream 5.0kb downstream 5000 false Scaffold248: 300538-305537 Capsella grandiflora
Cagra.0248s0086 10.0kb upstream 10.0kb upstream 13254 true Scaffold248: 305538-318791 Capsella grandiflora
Cagra.0248s0086 10.0kb upstream 10.0kb upstream 10000 false Scaffold248: 308792-318791 Capsella grandiflora
Cagra.0248s0086 10.0kb downstream 10.0kb downstream 13254 true Scaffold248: 295538-308791 Capsella grandiflora
Cagra.0248s0086 10.0kb downstream 10.0kb downstream 10000 false Scaffold248: 295538-305537 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368604 5261 Brassicaceae View MSA
123832530 5264 Brassicales-Malvales View MSA
124344288 5266 SBM View MSA
124238938 5268 Malvidae View MSA
124063360 5270 Rosid View MSA
123737264 5271 Pentapetalae View MSA
122787973 5272 Eudicot View MSA
122041760 5273 Angiosperm View MSA
121345245 5274 Embryophyte View MSA
123424323 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain