Gene : Cagra.0239s0030 C. grandiflora v1.1
Defline:  (1 of 2) PTHR10209:SF181 - 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED Genomic Order:  30
Name:  ? Cagra.0239s0030 Secondary Identifier:  ? PAC:28915464
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Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY1F-823 Capsella grandiflora pathologic  
Cgrandiflora PWY1F-FLAVSYN Capsella grandiflora pathologic  
Cgrandiflora PWY-5059 Capsella grandiflora pathologic  
Cgrandiflora PWY-5152 Capsella grandiflora pathologic  
Cgrandiflora PWY-6787 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0239s0030 0.5kb upstream 0.5kb upstream 2213 true Scaffold239: 87987-90199 Capsella grandiflora
Cagra.0239s0030 0.5kb upstream 0.5kb upstream 500 false Scaffold239: 87987-88486 Capsella grandiflora
Cagra.0239s0030 0.5kb downstream 0.5kb downstream 2213 true Scaffold239: 88487-90699 Capsella grandiflora
Cagra.0239s0030 0.5kb downstream 0.5kb downstream 500 false Scaffold239: 90200-90699 Capsella grandiflora
Cagra.0239s0030 1.0kb upstream 1.0kb upstream 2713 true Scaffold239: 87487-90199 Capsella grandiflora
Cagra.0239s0030 1.0kb upstream 1.0kb upstream 1000 false Scaffold239: 87487-88486 Capsella grandiflora
Cagra.0239s0030 1.0kb downstream 1.0kb downstream 2713 true Scaffold239: 88487-91199 Capsella grandiflora
Cagra.0239s0030 1.0kb downstream 1.0kb downstream 1000 false Scaffold239: 90200-91199 Capsella grandiflora
Cagra.0239s0030 2.0kb upstream 2.0kb upstream 3713 true Scaffold239: 86487-90199 Capsella grandiflora
Cagra.0239s0030 2.0kb upstream 2.0kb upstream 2000 false Scaffold239: 86487-88486 Capsella grandiflora
Cagra.0239s0030 2.0kb downstream 2.0kb downstream 3713 true Scaffold239: 88487-92199 Capsella grandiflora
Cagra.0239s0030 2.0kb downstream 2.0kb downstream 2000 false Scaffold239: 90200-92199 Capsella grandiflora
Cagra.0239s0030 5.0kb upstream 5.0kb upstream 6713 true Scaffold239: 83487-90199 Capsella grandiflora
Cagra.0239s0030 5.0kb upstream 5.0kb upstream 5000 false Scaffold239: 83487-88486 Capsella grandiflora
Cagra.0239s0030 5.0kb downstream 5.0kb downstream 6713 true Scaffold239: 88487-95199 Capsella grandiflora
Cagra.0239s0030 5.0kb downstream 5.0kb downstream 5000 false Scaffold239: 90200-95199 Capsella grandiflora
Cagra.0239s0030 10.0kb upstream 10.0kb upstream 11713 true Scaffold239: 78487-90199 Capsella grandiflora
Cagra.0239s0030 10.0kb upstream 10.0kb upstream 10000 false Scaffold239: 78487-88486 Capsella grandiflora
Cagra.0239s0030 10.0kb downstream 10.0kb downstream 11713 true Scaffold239: 88487-100199 Capsella grandiflora
Cagra.0239s0030 10.0kb downstream 10.0kb downstream 10000 false Scaffold239: 90200-100199 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122381049 5261 Brassicaceae View MSA
123837826 5264 Brassicales-Malvales View MSA
124349798 5266 SBM View MSA
124248174 5268 Malvidae View MSA
124071702 5270 Rosid View MSA
123753331 5271 Pentapetalae View MSA
122797647 5272 Eudicot View MSA
122051611 5273 Angiosperm View MSA
123429101 5275 Viridiplantae View MSA
121351374 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain