Gene : Cagra.0239s0078 C. grandiflora v1.1
Defline:  (1 of 1) PTHR11735:SF12 - TRNA N6-ADENOSINE THREONYLCARBAMOYLTRANSFERASE, MITOCHONDRIAL-RELATED Genomic Order:  78
Name:  ? Cagra.0239s0078 Secondary Identifier:  ? PAC:28915446
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY0-1587 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0239s0078 0.5kb upstream 0.5kb upstream 3335 true Scaffold239: 283132-286466 Capsella grandiflora
Cagra.0239s0078 0.5kb upstream 0.5kb upstream 500 false Scaffold239: 283132-283631 Capsella grandiflora
Cagra.0239s0078 0.5kb downstream 0.5kb downstream 3335 true Scaffold239: 283632-286966 Capsella grandiflora
Cagra.0239s0078 0.5kb downstream 0.5kb downstream 500 false Scaffold239: 286467-286966 Capsella grandiflora
Cagra.0239s0078 1.0kb upstream 1.0kb upstream 3835 true Scaffold239: 282632-286466 Capsella grandiflora
Cagra.0239s0078 1.0kb upstream 1.0kb upstream 1000 false Scaffold239: 282632-283631 Capsella grandiflora
Cagra.0239s0078 1.0kb downstream 1.0kb downstream 3835 true Scaffold239: 283632-287466 Capsella grandiflora
Cagra.0239s0078 1.0kb downstream 1.0kb downstream 1000 false Scaffold239: 286467-287466 Capsella grandiflora
Cagra.0239s0078 2.0kb upstream 2.0kb upstream 4835 true Scaffold239: 281632-286466 Capsella grandiflora
Cagra.0239s0078 2.0kb upstream 2.0kb upstream 2000 false Scaffold239: 281632-283631 Capsella grandiflora
Cagra.0239s0078 2.0kb downstream 2.0kb downstream 4835 true Scaffold239: 283632-288466 Capsella grandiflora
Cagra.0239s0078 2.0kb downstream 2.0kb downstream 2000 false Scaffold239: 286467-288466 Capsella grandiflora
Cagra.0239s0078 5.0kb upstream 5.0kb upstream 7835 true Scaffold239: 278632-286466 Capsella grandiflora
Cagra.0239s0078 5.0kb upstream 5.0kb upstream 5000 false Scaffold239: 278632-283631 Capsella grandiflora
Cagra.0239s0078 5.0kb downstream 5.0kb downstream 6066 true Scaffold239: 283632-289697 Capsella grandiflora
Cagra.0239s0078 5.0kb downstream 5.0kb downstream 3231 false Scaffold239: 286467-289697 Capsella grandiflora
Cagra.0239s0078 10.0kb upstream 10.0kb upstream 12835 true Scaffold239: 273632-286466 Capsella grandiflora
Cagra.0239s0078 10.0kb upstream 10.0kb upstream 10000 false Scaffold239: 273632-283631 Capsella grandiflora
Cagra.0239s0078 10.0kb downstream 10.0kb downstream 6066 true Scaffold239: 283632-289697 Capsella grandiflora
Cagra.0239s0078 10.0kb downstream 10.0kb downstream 3231 false Scaffold239: 286467-289697 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375853 5261 Brassicaceae View MSA
123832586 5264 Brassicales-Malvales View MSA
124350646 5266 SBM View MSA
124246525 5268 Malvidae View MSA
124066071 5270 Rosid View MSA
123747951 5271 Pentapetalae View MSA
122791458 5272 Eudicot View MSA
122043416 5273 Angiosperm View MSA
121345797 5274 Embryophyte View MSA
123425080 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain