Gene : Cagra.0239s0075 C. grandiflora v1.1
Defline:  (1 of 2) PTHR31707:SF11 - PECTINESTERASE/PECTINESTERASE INHIBITOR 17-RELATED Genomic Order:  75
Name:  ? Cagra.0239s0075 Secondary Identifier:  ? PAC:28915432
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-1081 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0239s0075 0.5kb upstream 0.5kb upstream 2811 true Scaffold239: 271078-273888 Capsella grandiflora
Cagra.0239s0075 0.5kb upstream 0.5kb upstream 500 false Scaffold239: 273389-273888 Capsella grandiflora
Cagra.0239s0075 0.5kb downstream 0.5kb downstream 2811 true Scaffold239: 270578-273388 Capsella grandiflora
Cagra.0239s0075 0.5kb downstream 0.5kb downstream 500 false Scaffold239: 270578-271077 Capsella grandiflora
Cagra.0239s0075 1.0kb upstream 1.0kb upstream 3311 true Scaffold239: 271078-274388 Capsella grandiflora
Cagra.0239s0075 1.0kb upstream 1.0kb upstream 1000 false Scaffold239: 273389-274388 Capsella grandiflora
Cagra.0239s0075 1.0kb downstream 1.0kb downstream 3311 true Scaffold239: 270078-273388 Capsella grandiflora
Cagra.0239s0075 1.0kb downstream 1.0kb downstream 1000 false Scaffold239: 270078-271077 Capsella grandiflora
Cagra.0239s0075 2.0kb upstream 2.0kb upstream 4311 true Scaffold239: 271078-275388 Capsella grandiflora
Cagra.0239s0075 2.0kb upstream 2.0kb upstream 2000 false Scaffold239: 273389-275388 Capsella grandiflora
Cagra.0239s0075 2.0kb downstream 2.0kb downstream 4311 true Scaffold239: 269078-273388 Capsella grandiflora
Cagra.0239s0075 2.0kb downstream 2.0kb downstream 2000 false Scaffold239: 269078-271077 Capsella grandiflora
Cagra.0239s0075 5.0kb upstream 5.0kb upstream 7311 true Scaffold239: 271078-278388 Capsella grandiflora
Cagra.0239s0075 5.0kb upstream 5.0kb upstream 5000 false Scaffold239: 273389-278388 Capsella grandiflora
Cagra.0239s0075 5.0kb downstream 5.0kb downstream 7311 true Scaffold239: 266078-273388 Capsella grandiflora
Cagra.0239s0075 5.0kb downstream 5.0kb downstream 5000 false Scaffold239: 266078-271077 Capsella grandiflora
Cagra.0239s0075 10.0kb upstream 10.0kb upstream 12311 true Scaffold239: 271078-283388 Capsella grandiflora
Cagra.0239s0075 10.0kb upstream 10.0kb upstream 10000 false Scaffold239: 273389-283388 Capsella grandiflora
Cagra.0239s0075 10.0kb downstream 10.0kb downstream 12311 true Scaffold239: 261078-273388 Capsella grandiflora
Cagra.0239s0075 10.0kb downstream 10.0kb downstream 10000 false Scaffold239: 261078-271077 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367798 5261 Brassicaceae View MSA
123832667 5264 Brassicales-Malvales View MSA
124337029 5266 SBM View MSA
124245744 5268 Malvidae View MSA
124070854 5270 Rosid View MSA
123751128 5271 Pentapetalae View MSA
122793966 5272 Eudicot View MSA
122051530 5273 Angiosperm View MSA
121350573 5274 Embryophyte View MSA
123381802 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain