Gene : Cagra.0228s0004 C. grandiflora v1.1
Defline:  (1 of 2) KOG0003 - Ubiquitin/60s ribosomal protein L40 fusion Genomic Order:  4
Name:  ? Cagra.0228s0004 Secondary Identifier:  ? PAC:28914667
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0228s0004 0.5kb upstream 0.5kb upstream 1585 true Scaffold228: 6147-7731 Capsella grandiflora
Cagra.0228s0004 0.5kb upstream 0.5kb upstream 500 false Scaffold228: 6147-6646 Capsella grandiflora
Cagra.0228s0004 0.5kb downstream 0.5kb downstream 1585 true Scaffold228: 6647-8231 Capsella grandiflora
Cagra.0228s0004 0.5kb downstream 0.5kb downstream 500 false Scaffold228: 7732-8231 Capsella grandiflora
Cagra.0228s0004 1.0kb upstream 1.0kb upstream 2085 true Scaffold228: 5647-7731 Capsella grandiflora
Cagra.0228s0004 1.0kb upstream 1.0kb upstream 1000 false Scaffold228: 5647-6646 Capsella grandiflora
Cagra.0228s0004 1.0kb downstream 1.0kb downstream 2085 true Scaffold228: 6647-8731 Capsella grandiflora
Cagra.0228s0004 1.0kb downstream 1.0kb downstream 1000 false Scaffold228: 7732-8731 Capsella grandiflora
Cagra.0228s0004 2.0kb upstream 2.0kb upstream 3085 true Scaffold228: 4647-7731 Capsella grandiflora
Cagra.0228s0004 2.0kb upstream 2.0kb upstream 2000 false Scaffold228: 4647-6646 Capsella grandiflora
Cagra.0228s0004 2.0kb downstream 2.0kb downstream 3085 true Scaffold228: 6647-9731 Capsella grandiflora
Cagra.0228s0004 2.0kb downstream 2.0kb downstream 2000 false Scaffold228: 7732-9731 Capsella grandiflora
Cagra.0228s0004 5.0kb upstream 5.0kb upstream 6085 true Scaffold228: 1647-7731 Capsella grandiflora
Cagra.0228s0004 5.0kb upstream 5.0kb upstream 5000 false Scaffold228: 1647-6646 Capsella grandiflora
Cagra.0228s0004 5.0kb downstream 5.0kb downstream 6085 true Scaffold228: 6647-12731 Capsella grandiflora
Cagra.0228s0004 5.0kb downstream 5.0kb downstream 5000 false Scaffold228: 7732-12731 Capsella grandiflora
Cagra.0228s0004 10.0kb upstream 10.0kb upstream 7731 true Scaffold228: 1-7731 Capsella grandiflora
Cagra.0228s0004 10.0kb upstream 10.0kb upstream 6646 false Scaffold228: 1-6646 Capsella grandiflora
Cagra.0228s0004 10.0kb downstream 10.0kb downstream 11085 true Scaffold228: 6647-17731 Capsella grandiflora
Cagra.0228s0004 10.0kb downstream 10.0kb downstream 10000 false Scaffold228: 7732-17731 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379715 5261 Brassicaceae View MSA
123841008 5264 Brassicales-Malvales View MSA
124341254 5266 SBM View MSA
124250872 5268 Malvidae View MSA
124071470 5270 Rosid View MSA
123747920 5271 Pentapetalae View MSA
122794311 5272 Eudicot View MSA
122042303 5273 Angiosperm View MSA
121349234 5274 Embryophyte View MSA
123425972 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain