Gene : Cagra.0228s0010 C. grandiflora v1.1
Defline:  (1 of 1) 5.3.1.16 - 1-(5-phosphoribosyl)-5- ((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase / Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase Genomic Order:  10
Name:  ? Cagra.0228s0010 Secondary Identifier:  ? PAC:28914711
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora HISTSYN-PWY Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0228s0010 0.5kb upstream 0.5kb upstream 2459 true Scaffold228: 30945-33403 Capsella grandiflora
Cagra.0228s0010 0.5kb upstream 0.5kb upstream 500 false Scaffold228: 32904-33403 Capsella grandiflora
Cagra.0228s0010 0.5kb downstream 0.5kb downstream 2459 true Scaffold228: 30445-32903 Capsella grandiflora
Cagra.0228s0010 0.5kb downstream 0.5kb downstream 500 false Scaffold228: 30445-30944 Capsella grandiflora
Cagra.0228s0010 1.0kb upstream 1.0kb upstream 2959 true Scaffold228: 30945-33903 Capsella grandiflora
Cagra.0228s0010 1.0kb upstream 1.0kb upstream 1000 false Scaffold228: 32904-33903 Capsella grandiflora
Cagra.0228s0010 1.0kb downstream 1.0kb downstream 2959 true Scaffold228: 29945-32903 Capsella grandiflora
Cagra.0228s0010 1.0kb downstream 1.0kb downstream 1000 false Scaffold228: 29945-30944 Capsella grandiflora
Cagra.0228s0010 2.0kb upstream 2.0kb upstream 3959 true Scaffold228: 30945-34903 Capsella grandiflora
Cagra.0228s0010 2.0kb upstream 2.0kb upstream 2000 false Scaffold228: 32904-34903 Capsella grandiflora
Cagra.0228s0010 2.0kb downstream 2.0kb downstream 3959 true Scaffold228: 28945-32903 Capsella grandiflora
Cagra.0228s0010 2.0kb downstream 2.0kb downstream 2000 false Scaffold228: 28945-30944 Capsella grandiflora
Cagra.0228s0010 5.0kb upstream 5.0kb upstream 6959 true Scaffold228: 30945-37903 Capsella grandiflora
Cagra.0228s0010 5.0kb upstream 5.0kb upstream 5000 false Scaffold228: 32904-37903 Capsella grandiflora
Cagra.0228s0010 5.0kb downstream 5.0kb downstream 6959 true Scaffold228: 25945-32903 Capsella grandiflora
Cagra.0228s0010 5.0kb downstream 5.0kb downstream 5000 false Scaffold228: 25945-30944 Capsella grandiflora
Cagra.0228s0010 10.0kb upstream 10.0kb upstream 11959 true Scaffold228: 30945-42903 Capsella grandiflora
Cagra.0228s0010 10.0kb upstream 10.0kb upstream 10000 false Scaffold228: 32904-42903 Capsella grandiflora
Cagra.0228s0010 10.0kb downstream 10.0kb downstream 11959 true Scaffold228: 20945-32903 Capsella grandiflora
Cagra.0228s0010 10.0kb downstream 10.0kb downstream 10000 false Scaffold228: 20945-30944 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041281 5273 Angiosperm View MSA
122376497 5261 Brassicaceae View MSA
123835580 5264 Brassicales-Malvales View MSA
124343226 5266 SBM View MSA
124249241 5268 Malvidae View MSA
124061773 5270 Rosid View MSA
123737700 5271 Pentapetalae View MSA
122790553 5272 Eudicot View MSA
121347171 5274 Embryophyte View MSA
123424389 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain