Gene : Cagra.0210s0003 C. grandiflora v1.1
Defline:  (1 of 1) PTHR19376:SF11 - DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA1 Genomic Order:  3
Name:  ? Cagra.0210s0003 Secondary Identifier:  ? PAC:28908205
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0210s0003 0.5kb upstream 0.5kb upstream 9480 true Scaffold210: 8647-18126 Capsella grandiflora
Cagra.0210s0003 0.5kb upstream 0.5kb upstream 500 false Scaffold210: 8647-9146 Capsella grandiflora
Cagra.0210s0003 0.5kb downstream 0.5kb downstream 9480 true Scaffold210: 9147-18626 Capsella grandiflora
Cagra.0210s0003 0.5kb downstream 0.5kb downstream 500 false Scaffold210: 18127-18626 Capsella grandiflora
Cagra.0210s0003 1.0kb upstream 1.0kb upstream 9980 true Scaffold210: 8147-18126 Capsella grandiflora
Cagra.0210s0003 1.0kb upstream 1.0kb upstream 1000 false Scaffold210: 8147-9146 Capsella grandiflora
Cagra.0210s0003 1.0kb downstream 1.0kb downstream 9980 true Scaffold210: 9147-19126 Capsella grandiflora
Cagra.0210s0003 1.0kb downstream 1.0kb downstream 1000 false Scaffold210: 18127-19126 Capsella grandiflora
Cagra.0210s0003 2.0kb upstream 2.0kb upstream 10980 true Scaffold210: 7147-18126 Capsella grandiflora
Cagra.0210s0003 2.0kb upstream 2.0kb upstream 2000 false Scaffold210: 7147-9146 Capsella grandiflora
Cagra.0210s0003 2.0kb downstream 2.0kb downstream 10980 true Scaffold210: 9147-20126 Capsella grandiflora
Cagra.0210s0003 2.0kb downstream 2.0kb downstream 2000 false Scaffold210: 18127-20126 Capsella grandiflora
Cagra.0210s0003 5.0kb upstream 5.0kb upstream 13980 true Scaffold210: 4147-18126 Capsella grandiflora
Cagra.0210s0003 5.0kb upstream 5.0kb upstream 5000 false Scaffold210: 4147-9146 Capsella grandiflora
Cagra.0210s0003 5.0kb downstream 5.0kb downstream 13980 true Scaffold210: 9147-23126 Capsella grandiflora
Cagra.0210s0003 5.0kb downstream 5.0kb downstream 5000 false Scaffold210: 18127-23126 Capsella grandiflora
Cagra.0210s0003 10.0kb upstream 10.0kb upstream 18126 true Scaffold210: 1-18126 Capsella grandiflora
Cagra.0210s0003 10.0kb upstream 10.0kb upstream 9146 false Scaffold210: 1-9146 Capsella grandiflora
Cagra.0210s0003 10.0kb downstream 10.0kb downstream 18980 true Scaffold210: 9147-28126 Capsella grandiflora
Cagra.0210s0003 10.0kb downstream 10.0kb downstream 10000 false Scaffold210: 18127-28126 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370304 5261 Brassicaceae View MSA
123832966 5264 Brassicales-Malvales View MSA
124340101 5266 SBM View MSA
124240607 5268 Malvidae View MSA
124068682 5270 Rosid View MSA
123740783 5271 Pentapetalae View MSA
122786544 5272 Eudicot View MSA
122045680 5273 Angiosperm View MSA
121344248 5274 Embryophyte View MSA
123424891 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain