Gene : Cagra.0402s0079 C. grandiflora v1.1
Defline:  (1 of 1) PTHR22835//PTHR22835:SF267 - ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN Genomic Order:  79
Name:  ? Cagra.0402s0079 Secondary Identifier:  ? PAC:28907974
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora LIPAS-PWY Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0402s0079 0.5kb upstream 0.5kb upstream 2106 true Scaffold402: 281945-284050 Capsella grandiflora
Cagra.0402s0079 0.5kb upstream 0.5kb upstream 500 false Scaffold402: 281945-282444 Capsella grandiflora
Cagra.0402s0079 0.5kb downstream 0.5kb downstream 2106 true Scaffold402: 282445-284550 Capsella grandiflora
Cagra.0402s0079 0.5kb downstream 0.5kb downstream 500 false Scaffold402: 284051-284550 Capsella grandiflora
Cagra.0402s0079 1.0kb upstream 1.0kb upstream 2606 true Scaffold402: 281445-284050 Capsella grandiflora
Cagra.0402s0079 1.0kb upstream 1.0kb upstream 1000 false Scaffold402: 281445-282444 Capsella grandiflora
Cagra.0402s0079 1.0kb downstream 1.0kb downstream 2606 true Scaffold402: 282445-285050 Capsella grandiflora
Cagra.0402s0079 1.0kb downstream 1.0kb downstream 1000 false Scaffold402: 284051-285050 Capsella grandiflora
Cagra.0402s0079 2.0kb upstream 2.0kb upstream 3606 true Scaffold402: 280445-284050 Capsella grandiflora
Cagra.0402s0079 2.0kb upstream 2.0kb upstream 2000 false Scaffold402: 280445-282444 Capsella grandiflora
Cagra.0402s0079 2.0kb downstream 2.0kb downstream 3606 true Scaffold402: 282445-286050 Capsella grandiflora
Cagra.0402s0079 2.0kb downstream 2.0kb downstream 2000 false Scaffold402: 284051-286050 Capsella grandiflora
Cagra.0402s0079 5.0kb upstream 5.0kb upstream 6606 true Scaffold402: 277445-284050 Capsella grandiflora
Cagra.0402s0079 5.0kb upstream 5.0kb upstream 5000 false Scaffold402: 277445-282444 Capsella grandiflora
Cagra.0402s0079 5.0kb downstream 5.0kb downstream 6606 true Scaffold402: 282445-289050 Capsella grandiflora
Cagra.0402s0079 5.0kb downstream 5.0kb downstream 5000 false Scaffold402: 284051-289050 Capsella grandiflora
Cagra.0402s0079 10.0kb upstream 10.0kb upstream 11606 true Scaffold402: 272445-284050 Capsella grandiflora
Cagra.0402s0079 10.0kb upstream 10.0kb upstream 10000 false Scaffold402: 272445-282444 Capsella grandiflora
Cagra.0402s0079 10.0kb downstream 10.0kb downstream 11606 true Scaffold402: 282445-294050 Capsella grandiflora
Cagra.0402s0079 10.0kb downstream 10.0kb downstream 10000 false Scaffold402: 284051-294050 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372713 5261 Brassicaceae View MSA
123830982 5264 Brassicales-Malvales View MSA
124345476 5266 SBM View MSA
124253733 5268 Malvidae View MSA
124065806 5270 Rosid View MSA
123747165 5271 Pentapetalae View MSA
122791413 5272 Eudicot View MSA
122042370 5273 Angiosperm View MSA
121351762 5274 Embryophyte View MSA
123428079 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain