Gene : Cagra.0417s0004 C. grandiflora v1.1
Defline:  (1 of 1) PTHR31342:SF7 - PROTEIN CHUP1, CHLOROPLASTIC Genomic Order:  4
Name:  ? Cagra.0417s0004 Secondary Identifier:  ? PAC:28902606
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0417s0004 0.5kb upstream 0.5kb upstream 4346 true Scaffold417: 17168-21513 Capsella grandiflora
Cagra.0417s0004 0.5kb upstream 0.5kb upstream 500 false Scaffold417: 21014-21513 Capsella grandiflora
Cagra.0417s0004 0.5kb downstream 0.5kb downstream 4346 true Scaffold417: 16668-21013 Capsella grandiflora
Cagra.0417s0004 0.5kb downstream 0.5kb downstream 500 false Scaffold417: 16668-17167 Capsella grandiflora
Cagra.0417s0004 1.0kb upstream 1.0kb upstream 4846 true Scaffold417: 17168-22013 Capsella grandiflora
Cagra.0417s0004 1.0kb upstream 1.0kb upstream 1000 false Scaffold417: 21014-22013 Capsella grandiflora
Cagra.0417s0004 1.0kb downstream 1.0kb downstream 4846 true Scaffold417: 16168-21013 Capsella grandiflora
Cagra.0417s0004 1.0kb downstream 1.0kb downstream 1000 false Scaffold417: 16168-17167 Capsella grandiflora
Cagra.0417s0004 2.0kb upstream 2.0kb upstream 5846 true Scaffold417: 17168-23013 Capsella grandiflora
Cagra.0417s0004 2.0kb upstream 2.0kb upstream 2000 false Scaffold417: 21014-23013 Capsella grandiflora
Cagra.0417s0004 2.0kb downstream 2.0kb downstream 5846 true Scaffold417: 15168-21013 Capsella grandiflora
Cagra.0417s0004 2.0kb downstream 2.0kb downstream 2000 false Scaffold417: 15168-17167 Capsella grandiflora
Cagra.0417s0004 5.0kb upstream 5.0kb upstream 8846 true Scaffold417: 17168-26013 Capsella grandiflora
Cagra.0417s0004 5.0kb upstream 5.0kb upstream 5000 false Scaffold417: 21014-26013 Capsella grandiflora
Cagra.0417s0004 5.0kb downstream 5.0kb downstream 8846 true Scaffold417: 12168-21013 Capsella grandiflora
Cagra.0417s0004 5.0kb downstream 5.0kb downstream 5000 false Scaffold417: 12168-17167 Capsella grandiflora
Cagra.0417s0004 10.0kb upstream 10.0kb upstream 13846 true Scaffold417: 17168-31013 Capsella grandiflora
Cagra.0417s0004 10.0kb upstream 10.0kb upstream 10000 false Scaffold417: 21014-31013 Capsella grandiflora
Cagra.0417s0004 10.0kb downstream 10.0kb downstream 13846 true Scaffold417: 7168-21013 Capsella grandiflora
Cagra.0417s0004 10.0kb downstream 10.0kb downstream 10000 false Scaffold417: 7168-17167 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122333725 5261 Brassicaceae Singleton cluster - no MSA
123774640 5264 Brassicales-Malvales Singleton cluster - no MSA
124273072 5266 SBM Singleton cluster - no MSA
124249766 5268 Malvidae View MSA
124062330 5270 Rosid View MSA
123739628 5271 Pentapetalae View MSA
122790649 5272 Eudicot View MSA
122047771 5273 Angiosperm View MSA
121348939 5274 Embryophyte View MSA
123381088 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain