Gene : Cagra.0418s0006 C. grandiflora v1.1
Defline:  (1 of 3) 6.1.1.3 - Threonine--tRNA ligase / Threonyl-tRNA synthetase Genomic Order:  6
Name:  ? Cagra.0418s0006 Secondary Identifier:  ? PAC:28909257
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora TRNA-CHARGING-PWY Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0418s0006 0.5kb upstream 0.5kb upstream 4753 true Scaffold418: 16186-20938 Capsella grandiflora
Cagra.0418s0006 0.5kb upstream 0.5kb upstream 500 false Scaffold418: 16186-16685 Capsella grandiflora
Cagra.0418s0006 0.5kb downstream 0.5kb downstream 4753 true Scaffold418: 16686-21438 Capsella grandiflora
Cagra.0418s0006 0.5kb downstream 0.5kb downstream 500 false Scaffold418: 20939-21438 Capsella grandiflora
Cagra.0418s0006 1.0kb upstream 1.0kb upstream 5253 true Scaffold418: 15686-20938 Capsella grandiflora
Cagra.0418s0006 1.0kb upstream 1.0kb upstream 1000 false Scaffold418: 15686-16685 Capsella grandiflora
Cagra.0418s0006 1.0kb downstream 1.0kb downstream 5253 true Scaffold418: 16686-21938 Capsella grandiflora
Cagra.0418s0006 1.0kb downstream 1.0kb downstream 1000 false Scaffold418: 20939-21938 Capsella grandiflora
Cagra.0418s0006 2.0kb upstream 2.0kb upstream 6253 true Scaffold418: 14686-20938 Capsella grandiflora
Cagra.0418s0006 2.0kb upstream 2.0kb upstream 2000 false Scaffold418: 14686-16685 Capsella grandiflora
Cagra.0418s0006 2.0kb downstream 2.0kb downstream 6253 true Scaffold418: 16686-22938 Capsella grandiflora
Cagra.0418s0006 2.0kb downstream 2.0kb downstream 2000 false Scaffold418: 20939-22938 Capsella grandiflora
Cagra.0418s0006 5.0kb upstream 5.0kb upstream 9253 true Scaffold418: 11686-20938 Capsella grandiflora
Cagra.0418s0006 5.0kb upstream 5.0kb upstream 5000 false Scaffold418: 11686-16685 Capsella grandiflora
Cagra.0418s0006 5.0kb downstream 5.0kb downstream 9253 true Scaffold418: 16686-25938 Capsella grandiflora
Cagra.0418s0006 5.0kb downstream 5.0kb downstream 5000 false Scaffold418: 20939-25938 Capsella grandiflora
Cagra.0418s0006 10.0kb upstream 10.0kb upstream 14253 true Scaffold418: 6686-20938 Capsella grandiflora
Cagra.0418s0006 10.0kb upstream 10.0kb upstream 10000 false Scaffold418: 6686-16685 Capsella grandiflora
Cagra.0418s0006 10.0kb downstream 10.0kb downstream 14253 true Scaffold418: 16686-30938 Capsella grandiflora
Cagra.0418s0006 10.0kb downstream 10.0kb downstream 10000 false Scaffold418: 20939-30938 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360218 5261 Brassicaceae View MSA
123828544 5264 Brassicales-Malvales View MSA
124337472 5266 SBM View MSA
124249574 5268 Malvidae View MSA
124061778 5270 Rosid View MSA
123740183 5271 Pentapetalae View MSA
122787371 5272 Eudicot View MSA
122045647 5273 Angiosperm View MSA
123429084 5275 Viridiplantae View MSA
121345438 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain