Gene : Cagra.0450s0033 C. grandiflora v1.1
Defline:  (1 of 27) PF01535//PF12854//PF13041 - PPR repeat (PPR) // PPR repeat (PPR_1) // PPR repeat family (PPR_2) Genomic Order:  33
Name:  ? Cagra.0450s0033 Secondary Identifier:  ? PAC:28913143
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0450s0033 0.5kb upstream 0.5kb upstream 3517 true Scaffold450: 132632-136148 Capsella grandiflora
Cagra.0450s0033 0.5kb upstream 0.5kb upstream 500 false Scaffold450: 135649-136148 Capsella grandiflora
Cagra.0450s0033 0.5kb downstream 0.5kb downstream 3517 true Scaffold450: 132132-135648 Capsella grandiflora
Cagra.0450s0033 0.5kb downstream 0.5kb downstream 500 false Scaffold450: 132132-132631 Capsella grandiflora
Cagra.0450s0033 1.0kb upstream 1.0kb upstream 4017 true Scaffold450: 132632-136648 Capsella grandiflora
Cagra.0450s0033 1.0kb upstream 1.0kb upstream 1000 false Scaffold450: 135649-136648 Capsella grandiflora
Cagra.0450s0033 1.0kb downstream 1.0kb downstream 4017 true Scaffold450: 131632-135648 Capsella grandiflora
Cagra.0450s0033 1.0kb downstream 1.0kb downstream 1000 false Scaffold450: 131632-132631 Capsella grandiflora
Cagra.0450s0033 2.0kb upstream 2.0kb upstream 5017 true Scaffold450: 132632-137648 Capsella grandiflora
Cagra.0450s0033 2.0kb upstream 2.0kb upstream 2000 false Scaffold450: 135649-137648 Capsella grandiflora
Cagra.0450s0033 2.0kb downstream 2.0kb downstream 5017 true Scaffold450: 130632-135648 Capsella grandiflora
Cagra.0450s0033 2.0kb downstream 2.0kb downstream 2000 false Scaffold450: 130632-132631 Capsella grandiflora
Cagra.0450s0033 5.0kb upstream 5.0kb upstream 8017 true Scaffold450: 132632-140648 Capsella grandiflora
Cagra.0450s0033 5.0kb upstream 5.0kb upstream 5000 false Scaffold450: 135649-140648 Capsella grandiflora
Cagra.0450s0033 5.0kb downstream 5.0kb downstream 8017 true Scaffold450: 127632-135648 Capsella grandiflora
Cagra.0450s0033 5.0kb downstream 5.0kb downstream 5000 false Scaffold450: 127632-132631 Capsella grandiflora
Cagra.0450s0033 10.0kb upstream 10.0kb upstream 13017 true Scaffold450: 132632-145648 Capsella grandiflora
Cagra.0450s0033 10.0kb upstream 10.0kb upstream 10000 false Scaffold450: 135649-145648 Capsella grandiflora
Cagra.0450s0033 10.0kb downstream 10.0kb downstream 13017 true Scaffold450: 122632-135648 Capsella grandiflora
Cagra.0450s0033 10.0kb downstream 10.0kb downstream 10000 false Scaffold450: 122632-132631 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369713 5261 Brassicaceae View MSA
123830889 5264 Brassicales-Malvales View MSA
124344267 5266 SBM View MSA
124237982 5268 Malvidae View MSA
124061594 5270 Rosid View MSA
123740286 5271 Pentapetalae View MSA
122790311 5272 Eudicot View MSA
122046629 5273 Angiosperm View MSA
121310635 5274 Embryophyte View MSA
123348067 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain