Gene : Cagra.0389s0007 C. grandiflora v1.1
Defline:  (1 of 1) PTHR10906:SF9 - PREPROTEIN TRANSLOCASE SUBUNIT SCY1, CHLOROPLASTIC Genomic Order:  7
Name:  ? Cagra.0389s0007 Secondary Identifier:  ? PAC:28916358
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0389s0007 0.5kb upstream 0.5kb upstream 2916 true Scaffold389: 21421-24336 Capsella grandiflora
Cagra.0389s0007 0.5kb upstream 0.5kb upstream 500 false Scaffold389: 23837-24336 Capsella grandiflora
Cagra.0389s0007 0.5kb downstream 0.5kb downstream 2916 true Scaffold389: 20921-23836 Capsella grandiflora
Cagra.0389s0007 0.5kb downstream 0.5kb downstream 500 false Scaffold389: 20921-21420 Capsella grandiflora
Cagra.0389s0007 1.0kb upstream 1.0kb upstream 3416 true Scaffold389: 21421-24836 Capsella grandiflora
Cagra.0389s0007 1.0kb upstream 1.0kb upstream 1000 false Scaffold389: 23837-24836 Capsella grandiflora
Cagra.0389s0007 1.0kb downstream 1.0kb downstream 3416 true Scaffold389: 20421-23836 Capsella grandiflora
Cagra.0389s0007 1.0kb downstream 1.0kb downstream 1000 false Scaffold389: 20421-21420 Capsella grandiflora
Cagra.0389s0007 2.0kb upstream 2.0kb upstream 4416 true Scaffold389: 21421-25836 Capsella grandiflora
Cagra.0389s0007 2.0kb upstream 2.0kb upstream 2000 false Scaffold389: 23837-25836 Capsella grandiflora
Cagra.0389s0007 2.0kb downstream 2.0kb downstream 4416 true Scaffold389: 19421-23836 Capsella grandiflora
Cagra.0389s0007 2.0kb downstream 2.0kb downstream 2000 false Scaffold389: 19421-21420 Capsella grandiflora
Cagra.0389s0007 5.0kb upstream 5.0kb upstream 7416 true Scaffold389: 21421-28836 Capsella grandiflora
Cagra.0389s0007 5.0kb upstream 5.0kb upstream 5000 false Scaffold389: 23837-28836 Capsella grandiflora
Cagra.0389s0007 5.0kb downstream 5.0kb downstream 7416 true Scaffold389: 16421-23836 Capsella grandiflora
Cagra.0389s0007 5.0kb downstream 5.0kb downstream 5000 false Scaffold389: 16421-21420 Capsella grandiflora
Cagra.0389s0007 10.0kb upstream 10.0kb upstream 12416 true Scaffold389: 21421-33836 Capsella grandiflora
Cagra.0389s0007 10.0kb upstream 10.0kb upstream 10000 false Scaffold389: 23837-33836 Capsella grandiflora
Cagra.0389s0007 10.0kb downstream 10.0kb downstream 12416 true Scaffold389: 11421-23836 Capsella grandiflora
Cagra.0389s0007 10.0kb downstream 10.0kb downstream 10000 false Scaffold389: 11421-21420 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363653 5261 Brassicaceae View MSA
123829565 5264 Brassicales-Malvales View MSA
124340391 5266 SBM View MSA
124241538 5268 Malvidae View MSA
124063230 5270 Rosid View MSA
123738518 5271 Pentapetalae View MSA
122788956 5272 Eudicot View MSA
122046659 5273 Angiosperm View MSA
121346087 5274 Embryophyte View MSA
123425781 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain