Gene : Cagra.0355s0001 C. grandiflora v1.1
Defline:  (1 of 3) 5.4.99.5 - Chorismate mutase / Hydroxyphenylpyruvate synthase Genomic Order:  1
Name:  ? Cagra.0355s0001 Secondary Identifier:  ? PAC:28913612
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-3461 Capsella grandiflora pathologic  
Cgrandiflora PWY-3462 Capsella grandiflora pathologic  
Cgrandiflora PWY-3481 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0355s0001 0.5kb upstream 0.5kb upstream 2623 true Scaffold355: 223-2845 Capsella grandiflora
Cagra.0355s0001 0.5kb upstream 0.5kb upstream 500 false Scaffold355: 2346-2845 Capsella grandiflora
Cagra.0355s0001 0.5kb downstream 0.5kb downstream 2345 true Scaffold355: 1-2345 Capsella grandiflora
Cagra.0355s0001 0.5kb downstream 0.5kb downstream 222 false Scaffold355: 1-222 Capsella grandiflora
Cagra.0355s0001 1.0kb upstream 1.0kb upstream 3123 true Scaffold355: 223-3345 Capsella grandiflora
Cagra.0355s0001 1.0kb upstream 1.0kb upstream 1000 false Scaffold355: 2346-3345 Capsella grandiflora
Cagra.0355s0001 1.0kb downstream 1.0kb downstream 2345 true Scaffold355: 1-2345 Capsella grandiflora
Cagra.0355s0001 1.0kb downstream 1.0kb downstream 222 false Scaffold355: 1-222 Capsella grandiflora
Cagra.0355s0001 2.0kb upstream 2.0kb upstream 4123 true Scaffold355: 223-4345 Capsella grandiflora
Cagra.0355s0001 2.0kb upstream 2.0kb upstream 2000 false Scaffold355: 2346-4345 Capsella grandiflora
Cagra.0355s0001 2.0kb downstream 2.0kb downstream 2345 true Scaffold355: 1-2345 Capsella grandiflora
Cagra.0355s0001 2.0kb downstream 2.0kb downstream 222 false Scaffold355: 1-222 Capsella grandiflora
Cagra.0355s0001 5.0kb upstream 5.0kb upstream 7123 true Scaffold355: 223-7345 Capsella grandiflora
Cagra.0355s0001 5.0kb upstream 5.0kb upstream 5000 false Scaffold355: 2346-7345 Capsella grandiflora
Cagra.0355s0001 5.0kb downstream 5.0kb downstream 2345 true Scaffold355: 1-2345 Capsella grandiflora
Cagra.0355s0001 5.0kb downstream 5.0kb downstream 222 false Scaffold355: 1-222 Capsella grandiflora
Cagra.0355s0001 10.0kb upstream 10.0kb upstream 12123 true Scaffold355: 223-12345 Capsella grandiflora
Cagra.0355s0001 10.0kb upstream 10.0kb upstream 10000 false Scaffold355: 2346-12345 Capsella grandiflora
Cagra.0355s0001 10.0kb downstream 10.0kb downstream 2345 true Scaffold355: 1-2345 Capsella grandiflora
Cagra.0355s0001 10.0kb downstream 10.0kb downstream 222 false Scaffold355: 1-222 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041201 5273 Angiosperm View MSA
122372904 5261 Brassicaceae View MSA
123828372 5264 Brassicales-Malvales View MSA
124336779 5266 SBM View MSA
124252605 5268 Malvidae View MSA
124071158 5270 Rosid View MSA
123736644 5271 Pentapetalae View MSA
122792454 5272 Eudicot View MSA
121347234 5274 Embryophyte View MSA
123427559 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain