Gene : Cagra.0380s0020 C. grandiflora v1.1
Defline:  (1 of 1) PTHR33650:SF1 - CEMA-LIKE PROTON EXTRUSION PROTEIN-LIKE PROTEIN Genomic Order:  20
Name:  ? Cagra.0380s0020 Secondary Identifier:  ? PAC:28902106
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0380s0020 0.5kb upstream 0.5kb upstream 3130 true Scaffold380: 64761-67890 Capsella grandiflora
Cagra.0380s0020 0.5kb upstream 0.5kb upstream 500 false Scaffold380: 64761-65260 Capsella grandiflora
Cagra.0380s0020 0.5kb downstream 0.5kb downstream 3130 true Scaffold380: 65261-68390 Capsella grandiflora
Cagra.0380s0020 0.5kb downstream 0.5kb downstream 500 false Scaffold380: 67891-68390 Capsella grandiflora
Cagra.0380s0020 1.0kb upstream 1.0kb upstream 3630 true Scaffold380: 64261-67890 Capsella grandiflora
Cagra.0380s0020 1.0kb upstream 1.0kb upstream 1000 false Scaffold380: 64261-65260 Capsella grandiflora
Cagra.0380s0020 1.0kb downstream 1.0kb downstream 3630 true Scaffold380: 65261-68890 Capsella grandiflora
Cagra.0380s0020 1.0kb downstream 1.0kb downstream 1000 false Scaffold380: 67891-68890 Capsella grandiflora
Cagra.0380s0020 2.0kb upstream 2.0kb upstream 4630 true Scaffold380: 63261-67890 Capsella grandiflora
Cagra.0380s0020 2.0kb upstream 2.0kb upstream 2000 false Scaffold380: 63261-65260 Capsella grandiflora
Cagra.0380s0020 2.0kb downstream 2.0kb downstream 4630 true Scaffold380: 65261-69890 Capsella grandiflora
Cagra.0380s0020 2.0kb downstream 2.0kb downstream 2000 false Scaffold380: 67891-69890 Capsella grandiflora
Cagra.0380s0020 5.0kb upstream 5.0kb upstream 7630 true Scaffold380: 60261-67890 Capsella grandiflora
Cagra.0380s0020 5.0kb upstream 5.0kb upstream 5000 false Scaffold380: 60261-65260 Capsella grandiflora
Cagra.0380s0020 5.0kb downstream 5.0kb downstream 7630 true Scaffold380: 65261-72890 Capsella grandiflora
Cagra.0380s0020 5.0kb downstream 5.0kb downstream 5000 false Scaffold380: 67891-72890 Capsella grandiflora
Cagra.0380s0020 10.0kb upstream 10.0kb upstream 12630 true Scaffold380: 55261-67890 Capsella grandiflora
Cagra.0380s0020 10.0kb upstream 10.0kb upstream 10000 false Scaffold380: 55261-65260 Capsella grandiflora
Cagra.0380s0020 10.0kb downstream 10.0kb downstream 12630 true Scaffold380: 65261-77890 Capsella grandiflora
Cagra.0380s0020 10.0kb downstream 10.0kb downstream 10000 false Scaffold380: 67891-77890 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361291 5261 Brassicaceae View MSA
123832987 5264 Brassicales-Malvales View MSA
124321836 5266 SBM View MSA
124241036 5268 Malvidae View MSA
124066882 5270 Rosid View MSA
123744226 5271 Pentapetalae View MSA
122786508 5272 Eudicot View MSA
122044615 5273 Angiosperm View MSA
121350431 5274 Embryophyte View MSA
123427516 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain