Gene : Cagra.0342s0003 C. grandiflora v1.1
Defline:  (1 of 1) PTHR12419:SF7 - OTU DOMAIN-CONTAINING PROTEIN 3 Genomic Order:  3
Name:  ? Cagra.0342s0003 Secondary Identifier:  ? PAC:28909920
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0342s0003 0.5kb upstream 0.5kb upstream 3173 true Scaffold342: 3869-7041 Capsella grandiflora
Cagra.0342s0003 0.5kb upstream 0.5kb upstream 500 false Scaffold342: 3869-4368 Capsella grandiflora
Cagra.0342s0003 0.5kb downstream 0.5kb downstream 3173 true Scaffold342: 4369-7541 Capsella grandiflora
Cagra.0342s0003 0.5kb downstream 0.5kb downstream 500 false Scaffold342: 7042-7541 Capsella grandiflora
Cagra.0342s0003 1.0kb upstream 1.0kb upstream 3673 true Scaffold342: 3369-7041 Capsella grandiflora
Cagra.0342s0003 1.0kb upstream 1.0kb upstream 1000 false Scaffold342: 3369-4368 Capsella grandiflora
Cagra.0342s0003 1.0kb downstream 1.0kb downstream 3673 true Scaffold342: 4369-8041 Capsella grandiflora
Cagra.0342s0003 1.0kb downstream 1.0kb downstream 1000 false Scaffold342: 7042-8041 Capsella grandiflora
Cagra.0342s0003 2.0kb upstream 2.0kb upstream 4673 true Scaffold342: 2369-7041 Capsella grandiflora
Cagra.0342s0003 2.0kb upstream 2.0kb upstream 2000 false Scaffold342: 2369-4368 Capsella grandiflora
Cagra.0342s0003 2.0kb downstream 2.0kb downstream 4673 true Scaffold342: 4369-9041 Capsella grandiflora
Cagra.0342s0003 2.0kb downstream 2.0kb downstream 2000 false Scaffold342: 7042-9041 Capsella grandiflora
Cagra.0342s0003 5.0kb upstream 5.0kb upstream 7041 true Scaffold342: 1-7041 Capsella grandiflora
Cagra.0342s0003 5.0kb upstream 5.0kb upstream 4368 false Scaffold342: 1-4368 Capsella grandiflora
Cagra.0342s0003 5.0kb downstream 5.0kb downstream 7673 true Scaffold342: 4369-12041 Capsella grandiflora
Cagra.0342s0003 5.0kb downstream 5.0kb downstream 5000 false Scaffold342: 7042-12041 Capsella grandiflora
Cagra.0342s0003 10.0kb upstream 10.0kb upstream 7041 true Scaffold342: 1-7041 Capsella grandiflora
Cagra.0342s0003 10.0kb upstream 10.0kb upstream 4368 false Scaffold342: 1-4368 Capsella grandiflora
Cagra.0342s0003 10.0kb downstream 10.0kb downstream 12673 true Scaffold342: 4369-17041 Capsella grandiflora
Cagra.0342s0003 10.0kb downstream 10.0kb downstream 10000 false Scaffold342: 7042-17041 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366757 5261 Brassicaceae View MSA
123827934 5264 Brassicales-Malvales View MSA
124344066 5266 SBM View MSA
124241467 5268 Malvidae View MSA
124066483 5270 Rosid View MSA
123745546 5271 Pentapetalae View MSA
122787389 5272 Eudicot View MSA
122041608 5273 Angiosperm View MSA
121347051 5274 Embryophyte View MSA
123428461 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain