Gene : Cagra.0342s0020 C. grandiflora v1.1
Defline:  (1 of 2) PTHR23315:SF119 - U-BOX DOMAIN-CONTAINING PROTEIN 3 Genomic Order:  20
Name:  ? Cagra.0342s0020 Secondary Identifier:  ? PAC:28909894
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-7511 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0342s0020 0.5kb upstream 0.5kb upstream 3765 true Scaffold342: 69420-73184 Capsella grandiflora
Cagra.0342s0020 0.5kb upstream 0.5kb upstream 500 false Scaffold342: 69420-69919 Capsella grandiflora
Cagra.0342s0020 0.5kb downstream 0.5kb downstream 3765 true Scaffold342: 69920-73684 Capsella grandiflora
Cagra.0342s0020 0.5kb downstream 0.5kb downstream 500 false Scaffold342: 73185-73684 Capsella grandiflora
Cagra.0342s0020 1.0kb upstream 1.0kb upstream 4265 true Scaffold342: 68920-73184 Capsella grandiflora
Cagra.0342s0020 1.0kb upstream 1.0kb upstream 1000 false Scaffold342: 68920-69919 Capsella grandiflora
Cagra.0342s0020 1.0kb downstream 1.0kb downstream 4265 true Scaffold342: 69920-74184 Capsella grandiflora
Cagra.0342s0020 1.0kb downstream 1.0kb downstream 1000 false Scaffold342: 73185-74184 Capsella grandiflora
Cagra.0342s0020 2.0kb upstream 2.0kb upstream 5265 true Scaffold342: 67920-73184 Capsella grandiflora
Cagra.0342s0020 2.0kb upstream 2.0kb upstream 2000 false Scaffold342: 67920-69919 Capsella grandiflora
Cagra.0342s0020 2.0kb downstream 2.0kb downstream 5265 true Scaffold342: 69920-75184 Capsella grandiflora
Cagra.0342s0020 2.0kb downstream 2.0kb downstream 2000 false Scaffold342: 73185-75184 Capsella grandiflora
Cagra.0342s0020 5.0kb upstream 5.0kb upstream 8265 true Scaffold342: 64920-73184 Capsella grandiflora
Cagra.0342s0020 5.0kb upstream 5.0kb upstream 5000 false Scaffold342: 64920-69919 Capsella grandiflora
Cagra.0342s0020 5.0kb downstream 5.0kb downstream 8265 true Scaffold342: 69920-78184 Capsella grandiflora
Cagra.0342s0020 5.0kb downstream 5.0kb downstream 5000 false Scaffold342: 73185-78184 Capsella grandiflora
Cagra.0342s0020 10.0kb upstream 10.0kb upstream 13265 true Scaffold342: 59920-73184 Capsella grandiflora
Cagra.0342s0020 10.0kb upstream 10.0kb upstream 10000 false Scaffold342: 59920-69919 Capsella grandiflora
Cagra.0342s0020 10.0kb downstream 10.0kb downstream 13265 true Scaffold342: 69920-83184 Capsella grandiflora
Cagra.0342s0020 10.0kb downstream 10.0kb downstream 10000 false Scaffold342: 73185-83184 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365114 5261 Brassicaceae View MSA
123798893 5264 Brassicales-Malvales View MSA
124296469 5266 SBM View MSA
124250310 5268 Malvidae View MSA
124067773 5270 Rosid View MSA
123748124 5271 Pentapetalae View MSA
122789337 5272 Eudicot View MSA
122048814 5273 Angiosperm View MSA
121345933 5274 Embryophyte View MSA
123428864 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain