Gene : Cagra.0342s0025 C. grandiflora v1.1
Defline:  (1 of 21) PF00651//PF03000 - BTB/POZ domain (BTB) // NPH3 family (NPH3) Genomic Order:  25
Name:  ? Cagra.0342s0025 Secondary Identifier:  ? PAC:28909927
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0342s0025 0.5kb upstream 0.5kb upstream 3568 true Scaffold342: 89180-92747 Capsella grandiflora
Cagra.0342s0025 0.5kb upstream 0.5kb upstream 500 false Scaffold342: 89180-89679 Capsella grandiflora
Cagra.0342s0025 0.5kb downstream 0.5kb downstream 3568 true Scaffold342: 89680-93247 Capsella grandiflora
Cagra.0342s0025 0.5kb downstream 0.5kb downstream 500 false Scaffold342: 92748-93247 Capsella grandiflora
Cagra.0342s0025 1.0kb upstream 1.0kb upstream 4068 true Scaffold342: 88680-92747 Capsella grandiflora
Cagra.0342s0025 1.0kb upstream 1.0kb upstream 1000 false Scaffold342: 88680-89679 Capsella grandiflora
Cagra.0342s0025 1.0kb downstream 1.0kb downstream 4068 true Scaffold342: 89680-93747 Capsella grandiflora
Cagra.0342s0025 1.0kb downstream 1.0kb downstream 1000 false Scaffold342: 92748-93747 Capsella grandiflora
Cagra.0342s0025 2.0kb upstream 2.0kb upstream 5068 true Scaffold342: 87680-92747 Capsella grandiflora
Cagra.0342s0025 2.0kb upstream 2.0kb upstream 2000 false Scaffold342: 87680-89679 Capsella grandiflora
Cagra.0342s0025 2.0kb downstream 2.0kb downstream 5068 true Scaffold342: 89680-94747 Capsella grandiflora
Cagra.0342s0025 2.0kb downstream 2.0kb downstream 2000 false Scaffold342: 92748-94747 Capsella grandiflora
Cagra.0342s0025 5.0kb upstream 5.0kb upstream 8068 true Scaffold342: 84680-92747 Capsella grandiflora
Cagra.0342s0025 5.0kb upstream 5.0kb upstream 5000 false Scaffold342: 84680-89679 Capsella grandiflora
Cagra.0342s0025 5.0kb downstream 5.0kb downstream 8068 true Scaffold342: 89680-97747 Capsella grandiflora
Cagra.0342s0025 5.0kb downstream 5.0kb downstream 5000 false Scaffold342: 92748-97747 Capsella grandiflora
Cagra.0342s0025 10.0kb upstream 10.0kb upstream 13068 true Scaffold342: 79680-92747 Capsella grandiflora
Cagra.0342s0025 10.0kb upstream 10.0kb upstream 10000 false Scaffold342: 79680-89679 Capsella grandiflora
Cagra.0342s0025 10.0kb downstream 10.0kb downstream 13068 true Scaffold342: 89680-102747 Capsella grandiflora
Cagra.0342s0025 10.0kb downstream 10.0kb downstream 10000 false Scaffold342: 92748-102747 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368907 5261 Brassicaceae View MSA
123828132 5264 Brassicales-Malvales View MSA
124337858 5266 SBM View MSA
124238958 5268 Malvidae View MSA
124060971 5270 Rosid View MSA
123750839 5271 Pentapetalae View MSA
122787854 5272 Eudicot View MSA
122046367 5273 Angiosperm View MSA
121350656 5274 Embryophyte View MSA
123381839 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain