Gene : Cagra.0342s0045 C. grandiflora v1.1
Defline:  (1 of 168) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  45
Name:  ? Cagra.0342s0045 Secondary Identifier:  ? PAC:28909912
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0342s0045 0.5kb upstream 0.5kb upstream 3732 true Scaffold342: 160164-163895 Capsella grandiflora
Cagra.0342s0045 0.5kb upstream 0.5kb upstream 500 false Scaffold342: 160164-160663 Capsella grandiflora
Cagra.0342s0045 0.5kb downstream 0.5kb downstream 3732 true Scaffold342: 160664-164395 Capsella grandiflora
Cagra.0342s0045 0.5kb downstream 0.5kb downstream 500 false Scaffold342: 163896-164395 Capsella grandiflora
Cagra.0342s0045 1.0kb upstream 1.0kb upstream 4232 true Scaffold342: 159664-163895 Capsella grandiflora
Cagra.0342s0045 1.0kb upstream 1.0kb upstream 1000 false Scaffold342: 159664-160663 Capsella grandiflora
Cagra.0342s0045 1.0kb downstream 1.0kb downstream 4232 true Scaffold342: 160664-164895 Capsella grandiflora
Cagra.0342s0045 1.0kb downstream 1.0kb downstream 1000 false Scaffold342: 163896-164895 Capsella grandiflora
Cagra.0342s0045 2.0kb upstream 2.0kb upstream 5232 true Scaffold342: 158664-163895 Capsella grandiflora
Cagra.0342s0045 2.0kb upstream 2.0kb upstream 2000 false Scaffold342: 158664-160663 Capsella grandiflora
Cagra.0342s0045 2.0kb downstream 2.0kb downstream 5232 true Scaffold342: 160664-165895 Capsella grandiflora
Cagra.0342s0045 2.0kb downstream 2.0kb downstream 2000 false Scaffold342: 163896-165895 Capsella grandiflora
Cagra.0342s0045 5.0kb upstream 5.0kb upstream 8232 true Scaffold342: 155664-163895 Capsella grandiflora
Cagra.0342s0045 5.0kb upstream 5.0kb upstream 5000 false Scaffold342: 155664-160663 Capsella grandiflora
Cagra.0342s0045 5.0kb downstream 5.0kb downstream 8232 true Scaffold342: 160664-168895 Capsella grandiflora
Cagra.0342s0045 5.0kb downstream 5.0kb downstream 5000 false Scaffold342: 163896-168895 Capsella grandiflora
Cagra.0342s0045 10.0kb upstream 10.0kb upstream 13232 true Scaffold342: 150664-163895 Capsella grandiflora
Cagra.0342s0045 10.0kb upstream 10.0kb upstream 10000 false Scaffold342: 150664-160663 Capsella grandiflora
Cagra.0342s0045 10.0kb downstream 10.0kb downstream 13232 true Scaffold342: 160664-173895 Capsella grandiflora
Cagra.0342s0045 10.0kb downstream 10.0kb downstream 10000 false Scaffold342: 163896-173895 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374839 5261 Brassicaceae View MSA
123827716 5264 Brassicales-Malvales View MSA
124346504 5266 SBM View MSA
124241029 5268 Malvidae View MSA
124050394 5270 Rosid View MSA
123748612 5271 Pentapetalae View MSA
122791093 5272 Eudicot View MSA
122046985 5273 Angiosperm View MSA
121347235 5274 Embryophyte View MSA
123380515 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain