Gene : Cagra.0352s0002 C. grandiflora v1.1
Defline:  (1 of 1) PTHR12725//PTHR12725:SF81 - HALOACID DEHALOGENASE-LIKE HYDROLASE Genomic Order:  2
Name:  ? Cagra.0352s0002 Secondary Identifier:  ? PAC:28897299
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-7204 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0352s0002 0.5kb upstream 0.5kb upstream 1859 true Scaffold352: 4254-6112 Capsella grandiflora
Cagra.0352s0002 0.5kb upstream 0.5kb upstream 500 false Scaffold352: 4254-4753 Capsella grandiflora
Cagra.0352s0002 0.5kb downstream 0.5kb downstream 1859 true Scaffold352: 4754-6612 Capsella grandiflora
Cagra.0352s0002 0.5kb downstream 0.5kb downstream 500 false Scaffold352: 6113-6612 Capsella grandiflora
Cagra.0352s0002 1.0kb upstream 1.0kb upstream 2359 true Scaffold352: 3754-6112 Capsella grandiflora
Cagra.0352s0002 1.0kb upstream 1.0kb upstream 1000 false Scaffold352: 3754-4753 Capsella grandiflora
Cagra.0352s0002 1.0kb downstream 1.0kb downstream 2359 true Scaffold352: 4754-7112 Capsella grandiflora
Cagra.0352s0002 1.0kb downstream 1.0kb downstream 1000 false Scaffold352: 6113-7112 Capsella grandiflora
Cagra.0352s0002 2.0kb upstream 2.0kb upstream 3359 true Scaffold352: 2754-6112 Capsella grandiflora
Cagra.0352s0002 2.0kb upstream 2.0kb upstream 2000 false Scaffold352: 2754-4753 Capsella grandiflora
Cagra.0352s0002 2.0kb downstream 2.0kb downstream 3359 true Scaffold352: 4754-8112 Capsella grandiflora
Cagra.0352s0002 2.0kb downstream 2.0kb downstream 2000 false Scaffold352: 6113-8112 Capsella grandiflora
Cagra.0352s0002 5.0kb upstream 5.0kb upstream 6112 true Scaffold352: 1-6112 Capsella grandiflora
Cagra.0352s0002 5.0kb upstream 5.0kb upstream 4753 false Scaffold352: 1-4753 Capsella grandiflora
Cagra.0352s0002 5.0kb downstream 5.0kb downstream 6359 true Scaffold352: 4754-11112 Capsella grandiflora
Cagra.0352s0002 5.0kb downstream 5.0kb downstream 5000 false Scaffold352: 6113-11112 Capsella grandiflora
Cagra.0352s0002 10.0kb upstream 10.0kb upstream 6112 true Scaffold352: 1-6112 Capsella grandiflora
Cagra.0352s0002 10.0kb upstream 10.0kb upstream 4753 false Scaffold352: 1-4753 Capsella grandiflora
Cagra.0352s0002 10.0kb downstream 10.0kb downstream 11359 true Scaffold352: 4754-16112 Capsella grandiflora
Cagra.0352s0002 10.0kb downstream 10.0kb downstream 10000 false Scaffold352: 6113-16112 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360172 5261 Brassicaceae View MSA
123829872 5264 Brassicales-Malvales View MSA
124339280 5266 SBM View MSA
124243356 5268 Malvidae View MSA
124062962 5270 Rosid View MSA
123740146 5271 Pentapetalae View MSA
122790968 5272 Eudicot View MSA
122048898 5273 Angiosperm View MSA
121311158 5274 Embryophyte View MSA
123426890 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain