Gene : Cagra.0349s0003 C. grandiflora v1.1
Defline:  (1 of 1) 2.1.1.191 - 23S rRNA (cytosine(1962)-C(5))-methyltransferase / rRNA large subunit methyltransferase I Genomic Order:  3
Name:  ? Cagra.0349s0003 Secondary Identifier:  ? PAC:28912106
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0349s0003 0.5kb upstream 0.5kb upstream 2522 true Scaffold349: 6248-8769 Capsella grandiflora
Cagra.0349s0003 0.5kb upstream 0.5kb upstream 500 false Scaffold349: 6248-6747 Capsella grandiflora
Cagra.0349s0003 0.5kb downstream 0.5kb downstream 2522 true Scaffold349: 6748-9269 Capsella grandiflora
Cagra.0349s0003 0.5kb downstream 0.5kb downstream 500 false Scaffold349: 8770-9269 Capsella grandiflora
Cagra.0349s0003 1.0kb upstream 1.0kb upstream 3022 true Scaffold349: 5748-8769 Capsella grandiflora
Cagra.0349s0003 1.0kb upstream 1.0kb upstream 1000 false Scaffold349: 5748-6747 Capsella grandiflora
Cagra.0349s0003 1.0kb downstream 1.0kb downstream 3022 true Scaffold349: 6748-9769 Capsella grandiflora
Cagra.0349s0003 1.0kb downstream 1.0kb downstream 1000 false Scaffold349: 8770-9769 Capsella grandiflora
Cagra.0349s0003 2.0kb upstream 2.0kb upstream 4022 true Scaffold349: 4748-8769 Capsella grandiflora
Cagra.0349s0003 2.0kb upstream 2.0kb upstream 2000 false Scaffold349: 4748-6747 Capsella grandiflora
Cagra.0349s0003 2.0kb downstream 2.0kb downstream 4022 true Scaffold349: 6748-10769 Capsella grandiflora
Cagra.0349s0003 2.0kb downstream 2.0kb downstream 2000 false Scaffold349: 8770-10769 Capsella grandiflora
Cagra.0349s0003 5.0kb upstream 5.0kb upstream 7022 true Scaffold349: 1748-8769 Capsella grandiflora
Cagra.0349s0003 5.0kb upstream 5.0kb upstream 5000 false Scaffold349: 1748-6747 Capsella grandiflora
Cagra.0349s0003 5.0kb downstream 5.0kb downstream 6428 true Scaffold349: 6748-13175 Capsella grandiflora
Cagra.0349s0003 5.0kb downstream 5.0kb downstream 4406 false Scaffold349: 8770-13175 Capsella grandiflora
Cagra.0349s0003 10.0kb upstream 10.0kb upstream 8769 true Scaffold349: 1-8769 Capsella grandiflora
Cagra.0349s0003 10.0kb upstream 10.0kb upstream 6747 false Scaffold349: 1-6747 Capsella grandiflora
Cagra.0349s0003 10.0kb downstream 10.0kb downstream 6428 true Scaffold349: 6748-13175 Capsella grandiflora
Cagra.0349s0003 10.0kb downstream 10.0kb downstream 4406 false Scaffold349: 8770-13175 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360497 5261 Brassicaceae View MSA
123829455 5264 Brassicales-Malvales View MSA
124344940 5266 SBM View MSA
124239805 5268 Malvidae View MSA
124063460 5270 Rosid View MSA
123739745 5271 Pentapetalae View MSA
122788852 5272 Eudicot View MSA
122042200 5273 Angiosperm View MSA
121348163 5274 Embryophyte View MSA
123426103 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain