Gene : Cagra.0334s0012 C. grandiflora v1.1
Defline:  (1 of 1) PTHR10742:SF294 - PROTOPORPHYRINOGEN OXIDASE 1, CHLOROPLASTIC Genomic Order:  12
Name:  ? Cagra.0334s0012 Secondary Identifier:  ? PAC:28906499
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora CHLOROPHYLL-SYN Capsella grandiflora pathologic  
Cgrandiflora HEME-BIOSYNTHESIS-II Capsella grandiflora pathologic  
Cgrandiflora PWY-5918 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0334s0012 0.5kb upstream 0.5kb upstream 3461 true Scaffold334: 57242-60702 Capsella grandiflora
Cagra.0334s0012 0.5kb upstream 0.5kb upstream 500 false Scaffold334: 57242-57741 Capsella grandiflora
Cagra.0334s0012 0.5kb downstream 0.5kb downstream 3461 true Scaffold334: 57742-61202 Capsella grandiflora
Cagra.0334s0012 0.5kb downstream 0.5kb downstream 500 false Scaffold334: 60703-61202 Capsella grandiflora
Cagra.0334s0012 1.0kb upstream 1.0kb upstream 3961 true Scaffold334: 56742-60702 Capsella grandiflora
Cagra.0334s0012 1.0kb upstream 1.0kb upstream 1000 false Scaffold334: 56742-57741 Capsella grandiflora
Cagra.0334s0012 1.0kb downstream 1.0kb downstream 3961 true Scaffold334: 57742-61702 Capsella grandiflora
Cagra.0334s0012 1.0kb downstream 1.0kb downstream 1000 false Scaffold334: 60703-61702 Capsella grandiflora
Cagra.0334s0012 2.0kb upstream 2.0kb upstream 4961 true Scaffold334: 55742-60702 Capsella grandiflora
Cagra.0334s0012 2.0kb upstream 2.0kb upstream 2000 false Scaffold334: 55742-57741 Capsella grandiflora
Cagra.0334s0012 2.0kb downstream 2.0kb downstream 4961 true Scaffold334: 57742-62702 Capsella grandiflora
Cagra.0334s0012 2.0kb downstream 2.0kb downstream 2000 false Scaffold334: 60703-62702 Capsella grandiflora
Cagra.0334s0012 5.0kb upstream 5.0kb upstream 7961 true Scaffold334: 52742-60702 Capsella grandiflora
Cagra.0334s0012 5.0kb upstream 5.0kb upstream 5000 false Scaffold334: 52742-57741 Capsella grandiflora
Cagra.0334s0012 5.0kb downstream 5.0kb downstream 7961 true Scaffold334: 57742-65702 Capsella grandiflora
Cagra.0334s0012 5.0kb downstream 5.0kb downstream 5000 false Scaffold334: 60703-65702 Capsella grandiflora
Cagra.0334s0012 10.0kb upstream 10.0kb upstream 12961 true Scaffold334: 47742-60702 Capsella grandiflora
Cagra.0334s0012 10.0kb upstream 10.0kb upstream 10000 false Scaffold334: 47742-57741 Capsella grandiflora
Cagra.0334s0012 10.0kb downstream 10.0kb downstream 12961 true Scaffold334: 57742-70702 Capsella grandiflora
Cagra.0334s0012 10.0kb downstream 10.0kb downstream 10000 false Scaffold334: 60703-70702 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372816 5261 Brassicaceae View MSA
123832763 5264 Brassicales-Malvales View MSA
124343518 5266 SBM View MSA
124242274 5268 Malvidae View MSA
124065931 5270 Rosid View MSA
123747490 5271 Pentapetalae View MSA
122787686 5272 Eudicot View MSA
122041725 5273 Angiosperm View MSA
121347394 5274 Embryophyte View MSA
123424000 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain