Gene : Cagra.0334s0020 C. grandiflora v1.1
Defline:  (1 of 1) PTHR30612//PTHR30612:SF4 - SECA INNER MEMBRANE COMPONENT OF SEC PROTEIN SECRETION SYSTEM Genomic Order:  20
Name:  ? Cagra.0334s0020 Secondary Identifier:  ? PAC:28906495
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0334s0020 0.5kb upstream 0.5kb upstream 5689 true Scaffold334: 89698-95386 Capsella grandiflora
Cagra.0334s0020 0.5kb upstream 0.5kb upstream 500 false Scaffold334: 94887-95386 Capsella grandiflora
Cagra.0334s0020 0.5kb downstream 0.5kb downstream 5689 true Scaffold334: 89198-94886 Capsella grandiflora
Cagra.0334s0020 0.5kb downstream 0.5kb downstream 500 false Scaffold334: 89198-89697 Capsella grandiflora
Cagra.0334s0020 1.0kb upstream 1.0kb upstream 6189 true Scaffold334: 89698-95886 Capsella grandiflora
Cagra.0334s0020 1.0kb upstream 1.0kb upstream 1000 false Scaffold334: 94887-95886 Capsella grandiflora
Cagra.0334s0020 1.0kb downstream 1.0kb downstream 6189 true Scaffold334: 88698-94886 Capsella grandiflora
Cagra.0334s0020 1.0kb downstream 1.0kb downstream 1000 false Scaffold334: 88698-89697 Capsella grandiflora
Cagra.0334s0020 2.0kb upstream 2.0kb upstream 7189 true Scaffold334: 89698-96886 Capsella grandiflora
Cagra.0334s0020 2.0kb upstream 2.0kb upstream 2000 false Scaffold334: 94887-96886 Capsella grandiflora
Cagra.0334s0020 2.0kb downstream 2.0kb downstream 7189 true Scaffold334: 87698-94886 Capsella grandiflora
Cagra.0334s0020 2.0kb downstream 2.0kb downstream 2000 false Scaffold334: 87698-89697 Capsella grandiflora
Cagra.0334s0020 5.0kb upstream 5.0kb upstream 10189 true Scaffold334: 89698-99886 Capsella grandiflora
Cagra.0334s0020 5.0kb upstream 5.0kb upstream 5000 false Scaffold334: 94887-99886 Capsella grandiflora
Cagra.0334s0020 5.0kb downstream 5.0kb downstream 10189 true Scaffold334: 84698-94886 Capsella grandiflora
Cagra.0334s0020 5.0kb downstream 5.0kb downstream 5000 false Scaffold334: 84698-89697 Capsella grandiflora
Cagra.0334s0020 10.0kb upstream 10.0kb upstream 15189 true Scaffold334: 89698-104886 Capsella grandiflora
Cagra.0334s0020 10.0kb upstream 10.0kb upstream 10000 false Scaffold334: 94887-104886 Capsella grandiflora
Cagra.0334s0020 10.0kb downstream 10.0kb downstream 15189 true Scaffold334: 79698-94886 Capsella grandiflora
Cagra.0334s0020 10.0kb downstream 10.0kb downstream 10000 false Scaffold334: 79698-89697 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375114 5261 Brassicaceae View MSA
123832333 5264 Brassicales-Malvales View MSA
124345848 5266 SBM View MSA
124242672 5268 Malvidae View MSA
124067492 5270 Rosid View MSA
123740591 5271 Pentapetalae View MSA
122790576 5272 Eudicot View MSA
122047276 5273 Angiosperm View MSA
121346470 5274 Embryophyte View MSA
123428614 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain