Gene : Cagra.0334s0026 C. grandiflora v1.1
Defline:  (1 of 1) PTHR12998:SF0 - TRNA:M(4)X MODIFICATION ENZYME TRM13 HOMOLOG Genomic Order:  26
Name:  ? Cagra.0334s0026 Secondary Identifier:  ? PAC:28906520
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-6829 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0334s0026 0.5kb upstream 0.5kb upstream 2688 true Scaffold334: 120148-122835 Capsella grandiflora
Cagra.0334s0026 0.5kb upstream 0.5kb upstream 500 false Scaffold334: 122336-122835 Capsella grandiflora
Cagra.0334s0026 0.5kb downstream 0.5kb downstream 2688 true Scaffold334: 119648-122335 Capsella grandiflora
Cagra.0334s0026 0.5kb downstream 0.5kb downstream 500 false Scaffold334: 119648-120147 Capsella grandiflora
Cagra.0334s0026 1.0kb upstream 1.0kb upstream 3188 true Scaffold334: 120148-123335 Capsella grandiflora
Cagra.0334s0026 1.0kb upstream 1.0kb upstream 1000 false Scaffold334: 122336-123335 Capsella grandiflora
Cagra.0334s0026 1.0kb downstream 1.0kb downstream 3188 true Scaffold334: 119148-122335 Capsella grandiflora
Cagra.0334s0026 1.0kb downstream 1.0kb downstream 1000 false Scaffold334: 119148-120147 Capsella grandiflora
Cagra.0334s0026 2.0kb upstream 2.0kb upstream 4188 true Scaffold334: 120148-124335 Capsella grandiflora
Cagra.0334s0026 2.0kb upstream 2.0kb upstream 2000 false Scaffold334: 122336-124335 Capsella grandiflora
Cagra.0334s0026 2.0kb downstream 2.0kb downstream 4188 true Scaffold334: 118148-122335 Capsella grandiflora
Cagra.0334s0026 2.0kb downstream 2.0kb downstream 2000 false Scaffold334: 118148-120147 Capsella grandiflora
Cagra.0334s0026 5.0kb upstream 5.0kb upstream 7188 true Scaffold334: 120148-127335 Capsella grandiflora
Cagra.0334s0026 5.0kb upstream 5.0kb upstream 5000 false Scaffold334: 122336-127335 Capsella grandiflora
Cagra.0334s0026 5.0kb downstream 5.0kb downstream 7188 true Scaffold334: 115148-122335 Capsella grandiflora
Cagra.0334s0026 5.0kb downstream 5.0kb downstream 5000 false Scaffold334: 115148-120147 Capsella grandiflora
Cagra.0334s0026 10.0kb upstream 10.0kb upstream 12188 true Scaffold334: 120148-132335 Capsella grandiflora
Cagra.0334s0026 10.0kb upstream 10.0kb upstream 10000 false Scaffold334: 122336-132335 Capsella grandiflora
Cagra.0334s0026 10.0kb downstream 10.0kb downstream 12188 true Scaffold334: 110148-122335 Capsella grandiflora
Cagra.0334s0026 10.0kb downstream 10.0kb downstream 10000 false Scaffold334: 110148-120147 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366038 5261 Brassicaceae View MSA
123828827 5264 Brassicales-Malvales View MSA
124336653 5266 SBM View MSA
124240790 5268 Malvidae View MSA
124062140 5270 Rosid View MSA
123739890 5271 Pentapetalae View MSA
122785784 5272 Eudicot View MSA
122046541 5273 Angiosperm View MSA
121347915 5274 Embryophyte View MSA
123424709 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain