Gene : Cagra.0568s0064 C. grandiflora v1.1
Defline:  (1 of 1) PTHR10314:SF123 - TRYPTOPHAN SYNTHASE BETA CHAIN-LIKE PROTEIN Genomic Order:  64
Name:  ? Cagra.0568s0064 Secondary Identifier:  ? PAC:28910999
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora TRPSYN-PWY Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0568s0064 0.5kb upstream 0.5kb upstream 3358 true Scaffold568: 203461-206818 Capsella grandiflora
Cagra.0568s0064 0.5kb upstream 0.5kb upstream 500 false Scaffold568: 203461-203960 Capsella grandiflora
Cagra.0568s0064 0.5kb downstream 0.5kb downstream 3358 true Scaffold568: 203961-207318 Capsella grandiflora
Cagra.0568s0064 0.5kb downstream 0.5kb downstream 500 false Scaffold568: 206819-207318 Capsella grandiflora
Cagra.0568s0064 1.0kb upstream 1.0kb upstream 3858 true Scaffold568: 202961-206818 Capsella grandiflora
Cagra.0568s0064 1.0kb upstream 1.0kb upstream 1000 false Scaffold568: 202961-203960 Capsella grandiflora
Cagra.0568s0064 1.0kb downstream 1.0kb downstream 3858 true Scaffold568: 203961-207818 Capsella grandiflora
Cagra.0568s0064 1.0kb downstream 1.0kb downstream 1000 false Scaffold568: 206819-207818 Capsella grandiflora
Cagra.0568s0064 2.0kb upstream 2.0kb upstream 4858 true Scaffold568: 201961-206818 Capsella grandiflora
Cagra.0568s0064 2.0kb upstream 2.0kb upstream 2000 false Scaffold568: 201961-203960 Capsella grandiflora
Cagra.0568s0064 2.0kb downstream 2.0kb downstream 4858 true Scaffold568: 203961-208818 Capsella grandiflora
Cagra.0568s0064 2.0kb downstream 2.0kb downstream 2000 false Scaffold568: 206819-208818 Capsella grandiflora
Cagra.0568s0064 5.0kb upstream 5.0kb upstream 7858 true Scaffold568: 198961-206818 Capsella grandiflora
Cagra.0568s0064 5.0kb upstream 5.0kb upstream 5000 false Scaffold568: 198961-203960 Capsella grandiflora
Cagra.0568s0064 5.0kb downstream 5.0kb downstream 7858 true Scaffold568: 203961-211818 Capsella grandiflora
Cagra.0568s0064 5.0kb downstream 5.0kb downstream 5000 false Scaffold568: 206819-211818 Capsella grandiflora
Cagra.0568s0064 10.0kb upstream 10.0kb upstream 12858 true Scaffold568: 193961-206818 Capsella grandiflora
Cagra.0568s0064 10.0kb upstream 10.0kb upstream 10000 false Scaffold568: 193961-203960 Capsella grandiflora
Cagra.0568s0064 10.0kb downstream 10.0kb downstream 12858 true Scaffold568: 203961-216818 Capsella grandiflora
Cagra.0568s0064 10.0kb downstream 10.0kb downstream 10000 false Scaffold568: 206819-216818 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364301 5261 Brassicaceae View MSA
123832912 5264 Brassicales-Malvales View MSA
124344343 5266 SBM View MSA
124250400 5268 Malvidae View MSA
124062384 5270 Rosid View MSA
123745831 5271 Pentapetalae View MSA
122787401 5272 Eudicot View MSA
122044231 5273 Angiosperm View MSA
121344651 5274 Embryophyte View MSA
123423776 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain