Gene : Cagra.0568s0131 C. grandiflora v1.1
Defline:  (1 of 1) PTHR10683:SF10 - TRANSALDOLASE-LIKE PROTEIN Genomic Order:  131
Name:  ? Cagra.0568s0131 Secondary Identifier:  ? PAC:28910958
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora NONOXIPENT-PWY Capsella grandiflora pathologic  
Cgrandiflora PENTOSE-P-PWY Capsella grandiflora pathologic  
Cgrandiflora PWY-5723 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0568s0131 0.5kb upstream 0.5kb upstream 3500 true Scaffold568: 437808-441307 Capsella grandiflora
Cagra.0568s0131 0.5kb upstream 0.5kb upstream 500 false Scaffold568: 437808-438307 Capsella grandiflora
Cagra.0568s0131 0.5kb downstream 0.5kb downstream 3500 true Scaffold568: 438308-441807 Capsella grandiflora
Cagra.0568s0131 0.5kb downstream 0.5kb downstream 500 false Scaffold568: 441308-441807 Capsella grandiflora
Cagra.0568s0131 1.0kb upstream 1.0kb upstream 4000 true Scaffold568: 437308-441307 Capsella grandiflora
Cagra.0568s0131 1.0kb upstream 1.0kb upstream 1000 false Scaffold568: 437308-438307 Capsella grandiflora
Cagra.0568s0131 1.0kb downstream 1.0kb downstream 4000 true Scaffold568: 438308-442307 Capsella grandiflora
Cagra.0568s0131 1.0kb downstream 1.0kb downstream 1000 false Scaffold568: 441308-442307 Capsella grandiflora
Cagra.0568s0131 2.0kb upstream 2.0kb upstream 5000 true Scaffold568: 436308-441307 Capsella grandiflora
Cagra.0568s0131 2.0kb upstream 2.0kb upstream 2000 false Scaffold568: 436308-438307 Capsella grandiflora
Cagra.0568s0131 2.0kb downstream 2.0kb downstream 5000 true Scaffold568: 438308-443307 Capsella grandiflora
Cagra.0568s0131 2.0kb downstream 2.0kb downstream 2000 false Scaffold568: 441308-443307 Capsella grandiflora
Cagra.0568s0131 5.0kb upstream 5.0kb upstream 8000 true Scaffold568: 433308-441307 Capsella grandiflora
Cagra.0568s0131 5.0kb upstream 5.0kb upstream 5000 false Scaffold568: 433308-438307 Capsella grandiflora
Cagra.0568s0131 5.0kb downstream 5.0kb downstream 8000 true Scaffold568: 438308-446307 Capsella grandiflora
Cagra.0568s0131 5.0kb downstream 5.0kb downstream 5000 false Scaffold568: 441308-446307 Capsella grandiflora
Cagra.0568s0131 10.0kb upstream 10.0kb upstream 13000 true Scaffold568: 428308-441307 Capsella grandiflora
Cagra.0568s0131 10.0kb upstream 10.0kb upstream 10000 false Scaffold568: 428308-438307 Capsella grandiflora
Cagra.0568s0131 10.0kb downstream 10.0kb downstream 13000 true Scaffold568: 438308-451307 Capsella grandiflora
Cagra.0568s0131 10.0kb downstream 10.0kb downstream 10000 false Scaffold568: 441308-451307 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367260 5261 Brassicaceae View MSA
123834447 5264 Brassicales-Malvales View MSA
124345800 5266 SBM View MSA
124238554 5268 Malvidae View MSA
124061321 5270 Rosid View MSA
123737527 5271 Pentapetalae View MSA
122787081 5272 Eudicot View MSA
122043979 5273 Angiosperm View MSA
121346789 5274 Embryophyte View MSA
123424119 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain