Gene : Cagra.0562s0039 C. grandiflora v1.1
Defline:  (1 of 1) 2.4.2.10 - Orotate phosphoribosyltransferase / Orotidylic acid phosphorylase Genomic Order:  39
Name:  ? Cagra.0562s0039 Secondary Identifier:  ? PAC:28910763
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY0-162 Capsella grandiflora pathologic  
Cgrandiflora PWY-5686 Capsella grandiflora pathologic  
Cgrandiflora PWY-7211 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0562s0039 0.5kb upstream 0.5kb upstream 2479 true Scaffold562: 142927-145405 Capsella grandiflora
Cagra.0562s0039 0.5kb upstream 0.5kb upstream 500 false Scaffold562: 144906-145405 Capsella grandiflora
Cagra.0562s0039 0.5kb downstream 0.5kb downstream 2479 true Scaffold562: 142427-144905 Capsella grandiflora
Cagra.0562s0039 0.5kb downstream 0.5kb downstream 500 false Scaffold562: 142427-142926 Capsella grandiflora
Cagra.0562s0039 1.0kb upstream 1.0kb upstream 2979 true Scaffold562: 142927-145905 Capsella grandiflora
Cagra.0562s0039 1.0kb upstream 1.0kb upstream 1000 false Scaffold562: 144906-145905 Capsella grandiflora
Cagra.0562s0039 1.0kb downstream 1.0kb downstream 2979 true Scaffold562: 141927-144905 Capsella grandiflora
Cagra.0562s0039 1.0kb downstream 1.0kb downstream 1000 false Scaffold562: 141927-142926 Capsella grandiflora
Cagra.0562s0039 2.0kb upstream 2.0kb upstream 3979 true Scaffold562: 142927-146905 Capsella grandiflora
Cagra.0562s0039 2.0kb upstream 2.0kb upstream 2000 false Scaffold562: 144906-146905 Capsella grandiflora
Cagra.0562s0039 2.0kb downstream 2.0kb downstream 3979 true Scaffold562: 140927-144905 Capsella grandiflora
Cagra.0562s0039 2.0kb downstream 2.0kb downstream 2000 false Scaffold562: 140927-142926 Capsella grandiflora
Cagra.0562s0039 5.0kb upstream 5.0kb upstream 6979 true Scaffold562: 142927-149905 Capsella grandiflora
Cagra.0562s0039 5.0kb upstream 5.0kb upstream 5000 false Scaffold562: 144906-149905 Capsella grandiflora
Cagra.0562s0039 5.0kb downstream 5.0kb downstream 6979 true Scaffold562: 137927-144905 Capsella grandiflora
Cagra.0562s0039 5.0kb downstream 5.0kb downstream 5000 false Scaffold562: 137927-142926 Capsella grandiflora
Cagra.0562s0039 10.0kb upstream 10.0kb upstream 11979 true Scaffold562: 142927-154905 Capsella grandiflora
Cagra.0562s0039 10.0kb upstream 10.0kb upstream 10000 false Scaffold562: 144906-154905 Capsella grandiflora
Cagra.0562s0039 10.0kb downstream 10.0kb downstream 11979 true Scaffold562: 132927-144905 Capsella grandiflora
Cagra.0562s0039 10.0kb downstream 10.0kb downstream 10000 false Scaffold562: 132927-142926 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374061 5261 Brassicaceae View MSA
123840006 5264 Brassicales-Malvales View MSA
124338602 5266 SBM View MSA
124250162 5268 Malvidae View MSA
124060638 5270 Rosid View MSA
123751852 5271 Pentapetalae View MSA
122789079 5272 Eudicot View MSA
122042153 5273 Angiosperm View MSA
121351237 5274 Embryophyte View MSA
123424950 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain