Gene : Cagra.0542s0045 C. grandiflora v1.1
Defline:  (1 of 1) PTHR12866:SF2 - UBIQUITIN-LIKE-CONJUGATING ENZYME ATG3 Genomic Order:  45
Name:  ? Cagra.0542s0045 Secondary Identifier:  ? PAC:28916807
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0542s0045 0.5kb upstream 0.5kb upstream 3264 true Scaffold542: 170865-174128 Capsella grandiflora
Cagra.0542s0045 0.5kb upstream 0.5kb upstream 500 false Scaffold542: 173629-174128 Capsella grandiflora
Cagra.0542s0045 0.5kb downstream 0.5kb downstream 3264 true Scaffold542: 170365-173628 Capsella grandiflora
Cagra.0542s0045 0.5kb downstream 0.5kb downstream 500 false Scaffold542: 170365-170864 Capsella grandiflora
Cagra.0542s0045 1.0kb upstream 1.0kb upstream 3764 true Scaffold542: 170865-174628 Capsella grandiflora
Cagra.0542s0045 1.0kb upstream 1.0kb upstream 1000 false Scaffold542: 173629-174628 Capsella grandiflora
Cagra.0542s0045 1.0kb downstream 1.0kb downstream 3764 true Scaffold542: 169865-173628 Capsella grandiflora
Cagra.0542s0045 1.0kb downstream 1.0kb downstream 1000 false Scaffold542: 169865-170864 Capsella grandiflora
Cagra.0542s0045 2.0kb upstream 2.0kb upstream 4764 true Scaffold542: 170865-175628 Capsella grandiflora
Cagra.0542s0045 2.0kb upstream 2.0kb upstream 2000 false Scaffold542: 173629-175628 Capsella grandiflora
Cagra.0542s0045 2.0kb downstream 2.0kb downstream 4764 true Scaffold542: 168865-173628 Capsella grandiflora
Cagra.0542s0045 2.0kb downstream 2.0kb downstream 2000 false Scaffold542: 168865-170864 Capsella grandiflora
Cagra.0542s0045 5.0kb upstream 5.0kb upstream 7764 true Scaffold542: 170865-178628 Capsella grandiflora
Cagra.0542s0045 5.0kb upstream 5.0kb upstream 5000 false Scaffold542: 173629-178628 Capsella grandiflora
Cagra.0542s0045 5.0kb downstream 5.0kb downstream 7764 true Scaffold542: 165865-173628 Capsella grandiflora
Cagra.0542s0045 5.0kb downstream 5.0kb downstream 5000 false Scaffold542: 165865-170864 Capsella grandiflora
Cagra.0542s0045 10.0kb upstream 10.0kb upstream 12764 true Scaffold542: 170865-183628 Capsella grandiflora
Cagra.0542s0045 10.0kb upstream 10.0kb upstream 10000 false Scaffold542: 173629-183628 Capsella grandiflora
Cagra.0542s0045 10.0kb downstream 10.0kb downstream 12764 true Scaffold542: 160865-173628 Capsella grandiflora
Cagra.0542s0045 10.0kb downstream 10.0kb downstream 10000 false Scaffold542: 160865-170864 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369043 5261 Brassicaceae View MSA
123831045 5264 Brassicales-Malvales View MSA
124350961 5266 SBM View MSA
124242414 5268 Malvidae View MSA
124064028 5270 Rosid View MSA
123743996 5271 Pentapetalae View MSA
122789041 5272 Eudicot View MSA
122041877 5273 Angiosperm View MSA
121349462 5274 Embryophyte View MSA
123426307 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain