Gene : Cagra.0549s0005 C. grandiflora v1.1
Defline:  (1 of 1) PTHR20900 - NADH:UBIQUINONE OXIDOREDUCTASE B18-LIKE SUBUNIT Genomic Order:  5
Name:  ? Cagra.0549s0005 Secondary Identifier:  ? PAC:28915326
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-3781 Capsella grandiflora pathologic  
Cgrandiflora PWY-4302 Capsella grandiflora pathologic  
Cgrandiflora PWY-5083 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0549s0005 0.5kb upstream 0.5kb upstream 2170 true Scaffold549: 31980-34149 Capsella grandiflora
Cagra.0549s0005 0.5kb upstream 0.5kb upstream 374 false Scaffold549: 33776-34149 Capsella grandiflora
Cagra.0549s0005 0.5kb downstream 0.5kb downstream 2296 true Scaffold549: 31480-33775 Capsella grandiflora
Cagra.0549s0005 0.5kb downstream 0.5kb downstream 500 false Scaffold549: 31480-31979 Capsella grandiflora
Cagra.0549s0005 1.0kb upstream 1.0kb upstream 2170 true Scaffold549: 31980-34149 Capsella grandiflora
Cagra.0549s0005 1.0kb upstream 1.0kb upstream 374 false Scaffold549: 33776-34149 Capsella grandiflora
Cagra.0549s0005 1.0kb downstream 1.0kb downstream 2796 true Scaffold549: 30980-33775 Capsella grandiflora
Cagra.0549s0005 1.0kb downstream 1.0kb downstream 1000 false Scaffold549: 30980-31979 Capsella grandiflora
Cagra.0549s0005 2.0kb upstream 2.0kb upstream 2170 true Scaffold549: 31980-34149 Capsella grandiflora
Cagra.0549s0005 2.0kb upstream 2.0kb upstream 374 false Scaffold549: 33776-34149 Capsella grandiflora
Cagra.0549s0005 2.0kb downstream 2.0kb downstream 3796 true Scaffold549: 29980-33775 Capsella grandiflora
Cagra.0549s0005 2.0kb downstream 2.0kb downstream 2000 false Scaffold549: 29980-31979 Capsella grandiflora
Cagra.0549s0005 5.0kb upstream 5.0kb upstream 2170 true Scaffold549: 31980-34149 Capsella grandiflora
Cagra.0549s0005 5.0kb upstream 5.0kb upstream 374 false Scaffold549: 33776-34149 Capsella grandiflora
Cagra.0549s0005 5.0kb downstream 5.0kb downstream 6796 true Scaffold549: 26980-33775 Capsella grandiflora
Cagra.0549s0005 5.0kb downstream 5.0kb downstream 5000 false Scaffold549: 26980-31979 Capsella grandiflora
Cagra.0549s0005 10.0kb upstream 10.0kb upstream 2170 true Scaffold549: 31980-34149 Capsella grandiflora
Cagra.0549s0005 10.0kb upstream 10.0kb upstream 374 false Scaffold549: 33776-34149 Capsella grandiflora
Cagra.0549s0005 10.0kb downstream 10.0kb downstream 11796 true Scaffold549: 21980-33775 Capsella grandiflora
Cagra.0549s0005 10.0kb downstream 10.0kb downstream 10000 false Scaffold549: 21980-31979 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366785 5261 Brassicaceae View MSA
123829636 5264 Brassicales-Malvales View MSA
124339782 5266 SBM View MSA
124248818 5268 Malvidae View MSA
124065208 5270 Rosid View MSA
123736664 5271 Pentapetalae View MSA
122789933 5272 Eudicot View MSA
122042996 5273 Angiosperm View MSA
121349349 5274 Embryophyte View MSA
123428564 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain