Gene : Cagra.0534s0016 C. grandiflora v1.1
Defline:  (1 of 2) PTHR31576:SF2 - TATA BOX-BINDING PROTEIN-ASSOCIATED FACTOR RNA POLYMERASE I SUBUNIT B Genomic Order:  16
Name:  ? Cagra.0534s0016 Secondary Identifier:  ? PAC:28907676
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0534s0016 0.5kb upstream 0.5kb upstream 3106 true Scaffold534: 64487-67592 Capsella grandiflora
Cagra.0534s0016 0.5kb upstream 0.5kb upstream 500 false Scaffold534: 67093-67592 Capsella grandiflora
Cagra.0534s0016 0.5kb downstream 0.5kb downstream 3106 true Scaffold534: 63987-67092 Capsella grandiflora
Cagra.0534s0016 0.5kb downstream 0.5kb downstream 500 false Scaffold534: 63987-64486 Capsella grandiflora
Cagra.0534s0016 1.0kb upstream 1.0kb upstream 3606 true Scaffold534: 64487-68092 Capsella grandiflora
Cagra.0534s0016 1.0kb upstream 1.0kb upstream 1000 false Scaffold534: 67093-68092 Capsella grandiflora
Cagra.0534s0016 1.0kb downstream 1.0kb downstream 3606 true Scaffold534: 63487-67092 Capsella grandiflora
Cagra.0534s0016 1.0kb downstream 1.0kb downstream 1000 false Scaffold534: 63487-64486 Capsella grandiflora
Cagra.0534s0016 2.0kb upstream 2.0kb upstream 4606 true Scaffold534: 64487-69092 Capsella grandiflora
Cagra.0534s0016 2.0kb upstream 2.0kb upstream 2000 false Scaffold534: 67093-69092 Capsella grandiflora
Cagra.0534s0016 2.0kb downstream 2.0kb downstream 4606 true Scaffold534: 62487-67092 Capsella grandiflora
Cagra.0534s0016 2.0kb downstream 2.0kb downstream 2000 false Scaffold534: 62487-64486 Capsella grandiflora
Cagra.0534s0016 5.0kb upstream 5.0kb upstream 7606 true Scaffold534: 64487-72092 Capsella grandiflora
Cagra.0534s0016 5.0kb upstream 5.0kb upstream 5000 false Scaffold534: 67093-72092 Capsella grandiflora
Cagra.0534s0016 5.0kb downstream 5.0kb downstream 7606 true Scaffold534: 59487-67092 Capsella grandiflora
Cagra.0534s0016 5.0kb downstream 5.0kb downstream 5000 false Scaffold534: 59487-64486 Capsella grandiflora
Cagra.0534s0016 10.0kb upstream 10.0kb upstream 12606 true Scaffold534: 64487-77092 Capsella grandiflora
Cagra.0534s0016 10.0kb upstream 10.0kb upstream 10000 false Scaffold534: 67093-77092 Capsella grandiflora
Cagra.0534s0016 10.0kb downstream 10.0kb downstream 12606 true Scaffold534: 54487-67092 Capsella grandiflora
Cagra.0534s0016 10.0kb downstream 10.0kb downstream 10000 false Scaffold534: 54487-64486 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369855 5261 Brassicaceae View MSA
123829708 5264 Brassicales-Malvales View MSA
124338977 5266 SBM View MSA
124244133 5268 Malvidae View MSA
124065937 5270 Rosid View MSA
123742102 5271 Pentapetalae View MSA
122796533 5272 Eudicot View MSA
122050673 5273 Angiosperm View MSA
121345414 5274 Embryophyte View MSA
123427215 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain