Gene : Cagra.0534s0027 C. grandiflora v1.1
Defline:  (1 of 2) 2.7.8.7 - Holo-[acyl-carrier-protein] synthase / PPTase Genomic Order:  27
Name:  ? Cagra.0534s0027 Secondary Identifier:  ? PAC:28907649
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-6012-1 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0534s0027 0.5kb upstream 0.5kb upstream 2473 true Scaffold534: 127749-130221 Capsella grandiflora
Cagra.0534s0027 0.5kb upstream 0.5kb upstream 500 false Scaffold534: 127749-128248 Capsella grandiflora
Cagra.0534s0027 0.5kb downstream 0.5kb downstream 2473 true Scaffold534: 128249-130721 Capsella grandiflora
Cagra.0534s0027 0.5kb downstream 0.5kb downstream 500 false Scaffold534: 130222-130721 Capsella grandiflora
Cagra.0534s0027 1.0kb upstream 1.0kb upstream 2973 true Scaffold534: 127249-130221 Capsella grandiflora
Cagra.0534s0027 1.0kb upstream 1.0kb upstream 1000 false Scaffold534: 127249-128248 Capsella grandiflora
Cagra.0534s0027 1.0kb downstream 1.0kb downstream 2973 true Scaffold534: 128249-131221 Capsella grandiflora
Cagra.0534s0027 1.0kb downstream 1.0kb downstream 1000 false Scaffold534: 130222-131221 Capsella grandiflora
Cagra.0534s0027 2.0kb upstream 2.0kb upstream 3973 true Scaffold534: 126249-130221 Capsella grandiflora
Cagra.0534s0027 2.0kb upstream 2.0kb upstream 2000 false Scaffold534: 126249-128248 Capsella grandiflora
Cagra.0534s0027 2.0kb downstream 2.0kb downstream 3973 true Scaffold534: 128249-132221 Capsella grandiflora
Cagra.0534s0027 2.0kb downstream 2.0kb downstream 2000 false Scaffold534: 130222-132221 Capsella grandiflora
Cagra.0534s0027 5.0kb upstream 5.0kb upstream 6973 true Scaffold534: 123249-130221 Capsella grandiflora
Cagra.0534s0027 5.0kb upstream 5.0kb upstream 5000 false Scaffold534: 123249-128248 Capsella grandiflora
Cagra.0534s0027 5.0kb downstream 5.0kb downstream 6973 true Scaffold534: 128249-135221 Capsella grandiflora
Cagra.0534s0027 5.0kb downstream 5.0kb downstream 5000 false Scaffold534: 130222-135221 Capsella grandiflora
Cagra.0534s0027 10.0kb upstream 10.0kb upstream 11973 true Scaffold534: 118249-130221 Capsella grandiflora
Cagra.0534s0027 10.0kb upstream 10.0kb upstream 10000 false Scaffold534: 118249-128248 Capsella grandiflora
Cagra.0534s0027 10.0kb downstream 10.0kb downstream 11973 true Scaffold534: 128249-140221 Capsella grandiflora
Cagra.0534s0027 10.0kb downstream 10.0kb downstream 10000 false Scaffold534: 130222-140221 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365794 5261 Brassicaceae View MSA
123828451 5264 Brassicales-Malvales View MSA
124345495 5266 SBM View MSA
124252308 5268 Malvidae View MSA
124062449 5270 Rosid View MSA
123736560 5271 Pentapetalae View MSA
122793006 5272 Eudicot View MSA
122041832 5273 Angiosperm View MSA
123429078 5275 Viridiplantae View MSA
121344089 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain