Gene : Cagra.0537s0004 C. grandiflora v1.1
Defline:  (1 of 2) PF09011 - HMG-box domain (HMG_box_2) Genomic Order:  4
Name:  ? Cagra.0537s0004 Secondary Identifier:  ? PAC:28911723
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0537s0004 0.5kb upstream 0.5kb upstream 1711 true Scaffold537: 17627-19337 Capsella grandiflora
Cagra.0537s0004 0.5kb upstream 0.5kb upstream 500 false Scaffold537: 18838-19337 Capsella grandiflora
Cagra.0537s0004 0.5kb downstream 0.5kb downstream 1711 true Scaffold537: 17127-18837 Capsella grandiflora
Cagra.0537s0004 0.5kb downstream 0.5kb downstream 500 false Scaffold537: 17127-17626 Capsella grandiflora
Cagra.0537s0004 1.0kb upstream 1.0kb upstream 2211 true Scaffold537: 17627-19837 Capsella grandiflora
Cagra.0537s0004 1.0kb upstream 1.0kb upstream 1000 false Scaffold537: 18838-19837 Capsella grandiflora
Cagra.0537s0004 1.0kb downstream 1.0kb downstream 2211 true Scaffold537: 16627-18837 Capsella grandiflora
Cagra.0537s0004 1.0kb downstream 1.0kb downstream 1000 false Scaffold537: 16627-17626 Capsella grandiflora
Cagra.0537s0004 2.0kb upstream 2.0kb upstream 3211 true Scaffold537: 17627-20837 Capsella grandiflora
Cagra.0537s0004 2.0kb upstream 2.0kb upstream 2000 false Scaffold537: 18838-20837 Capsella grandiflora
Cagra.0537s0004 2.0kb downstream 2.0kb downstream 3211 true Scaffold537: 15627-18837 Capsella grandiflora
Cagra.0537s0004 2.0kb downstream 2.0kb downstream 2000 false Scaffold537: 15627-17626 Capsella grandiflora
Cagra.0537s0004 5.0kb upstream 5.0kb upstream 6211 true Scaffold537: 17627-23837 Capsella grandiflora
Cagra.0537s0004 5.0kb upstream 5.0kb upstream 5000 false Scaffold537: 18838-23837 Capsella grandiflora
Cagra.0537s0004 5.0kb downstream 5.0kb downstream 6211 true Scaffold537: 12627-18837 Capsella grandiflora
Cagra.0537s0004 5.0kb downstream 5.0kb downstream 5000 false Scaffold537: 12627-17626 Capsella grandiflora
Cagra.0537s0004 10.0kb upstream 10.0kb upstream 11211 true Scaffold537: 17627-28837 Capsella grandiflora
Cagra.0537s0004 10.0kb upstream 10.0kb upstream 10000 false Scaffold537: 18838-28837 Capsella grandiflora
Cagra.0537s0004 10.0kb downstream 10.0kb downstream 11211 true Scaffold537: 7627-18837 Capsella grandiflora
Cagra.0537s0004 10.0kb downstream 10.0kb downstream 10000 false Scaffold537: 7627-17626 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372688 5261 Brassicaceae View MSA
123833572 5264 Brassicales-Malvales View MSA
124337620 5266 SBM View MSA
124240629 5268 Malvidae View MSA
124064616 5270 Rosid View MSA
123751442 5271 Pentapetalae View MSA
122787834 5272 Eudicot View MSA
122046803 5273 Angiosperm View MSA
121349155 5274 Embryophyte View MSA
123426058 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain