Gene : Cagra.0537s0023 C. grandiflora v1.1
Defline:  (1 of 3) 5.4.99.5 - Chorismate mutase / Hydroxyphenylpyruvate synthase Genomic Order:  23
Name:  ? Cagra.0537s0023 Secondary Identifier:  ? PAC:28911729
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-3461 Capsella grandiflora pathologic  
Cgrandiflora PWY-3462 Capsella grandiflora pathologic  
Cgrandiflora PWY-3481 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0537s0023 0.5kb upstream 0.5kb upstream 2654 true Scaffold537: 92770-95423 Capsella grandiflora
Cagra.0537s0023 0.5kb upstream 0.5kb upstream 500 false Scaffold537: 92770-93269 Capsella grandiflora
Cagra.0537s0023 0.5kb downstream 0.5kb downstream 2654 true Scaffold537: 93270-95923 Capsella grandiflora
Cagra.0537s0023 0.5kb downstream 0.5kb downstream 500 false Scaffold537: 95424-95923 Capsella grandiflora
Cagra.0537s0023 1.0kb upstream 1.0kb upstream 3154 true Scaffold537: 92270-95423 Capsella grandiflora
Cagra.0537s0023 1.0kb upstream 1.0kb upstream 1000 false Scaffold537: 92270-93269 Capsella grandiflora
Cagra.0537s0023 1.0kb downstream 1.0kb downstream 3154 true Scaffold537: 93270-96423 Capsella grandiflora
Cagra.0537s0023 1.0kb downstream 1.0kb downstream 1000 false Scaffold537: 95424-96423 Capsella grandiflora
Cagra.0537s0023 2.0kb upstream 2.0kb upstream 4154 true Scaffold537: 91270-95423 Capsella grandiflora
Cagra.0537s0023 2.0kb upstream 2.0kb upstream 2000 false Scaffold537: 91270-93269 Capsella grandiflora
Cagra.0537s0023 2.0kb downstream 2.0kb downstream 4154 true Scaffold537: 93270-97423 Capsella grandiflora
Cagra.0537s0023 2.0kb downstream 2.0kb downstream 2000 false Scaffold537: 95424-97423 Capsella grandiflora
Cagra.0537s0023 5.0kb upstream 5.0kb upstream 7154 true Scaffold537: 88270-95423 Capsella grandiflora
Cagra.0537s0023 5.0kb upstream 5.0kb upstream 5000 false Scaffold537: 88270-93269 Capsella grandiflora
Cagra.0537s0023 5.0kb downstream 5.0kb downstream 7154 true Scaffold537: 93270-100423 Capsella grandiflora
Cagra.0537s0023 5.0kb downstream 5.0kb downstream 5000 false Scaffold537: 95424-100423 Capsella grandiflora
Cagra.0537s0023 10.0kb upstream 10.0kb upstream 12154 true Scaffold537: 83270-95423 Capsella grandiflora
Cagra.0537s0023 10.0kb upstream 10.0kb upstream 10000 false Scaffold537: 83270-93269 Capsella grandiflora
Cagra.0537s0023 10.0kb downstream 10.0kb downstream 12154 true Scaffold537: 93270-105423 Capsella grandiflora
Cagra.0537s0023 10.0kb downstream 10.0kb downstream 10000 false Scaffold537: 95424-105423 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041201 5273 Angiosperm View MSA
122377151 5261 Brassicaceae View MSA
123835152 5264 Brassicales-Malvales View MSA
124322009 5266 SBM View MSA
124252605 5268 Malvidae View MSA
124071158 5270 Rosid View MSA
123736644 5271 Pentapetalae View MSA
122792454 5272 Eudicot View MSA
121347234 5274 Embryophyte View MSA
123427559 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain