Gene : Cagra.0542s0001 C. grandiflora v1.1
Defline:  (1 of 1) PTHR10625:SF102 - HISTONE DEACETYLASE 10 Genomic Order:  1
Name:  ? Cagra.0542s0001 Secondary Identifier:  ? PAC:28916812
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0542s0001 0.5kb upstream 0.5kb upstream 8249 true Scaffold542: 956-9204 Capsella grandiflora
Cagra.0542s0001 0.5kb upstream 0.5kb upstream 500 false Scaffold542: 8705-9204 Capsella grandiflora
Cagra.0542s0001 0.5kb downstream 0.5kb downstream 8249 true Scaffold542: 456-8704 Capsella grandiflora
Cagra.0542s0001 0.5kb downstream 0.5kb downstream 500 false Scaffold542: 456-955 Capsella grandiflora
Cagra.0542s0001 1.0kb upstream 1.0kb upstream 8749 true Scaffold542: 956-9704 Capsella grandiflora
Cagra.0542s0001 1.0kb upstream 1.0kb upstream 1000 false Scaffold542: 8705-9704 Capsella grandiflora
Cagra.0542s0001 1.0kb downstream 1.0kb downstream 8704 true Scaffold542: 1-8704 Capsella grandiflora
Cagra.0542s0001 1.0kb downstream 1.0kb downstream 955 false Scaffold542: 1-955 Capsella grandiflora
Cagra.0542s0001 2.0kb upstream 2.0kb upstream 9749 true Scaffold542: 956-10704 Capsella grandiflora
Cagra.0542s0001 2.0kb upstream 2.0kb upstream 2000 false Scaffold542: 8705-10704 Capsella grandiflora
Cagra.0542s0001 2.0kb downstream 2.0kb downstream 8704 true Scaffold542: 1-8704 Capsella grandiflora
Cagra.0542s0001 2.0kb downstream 2.0kb downstream 955 false Scaffold542: 1-955 Capsella grandiflora
Cagra.0542s0001 5.0kb upstream 5.0kb upstream 12749 true Scaffold542: 956-13704 Capsella grandiflora
Cagra.0542s0001 5.0kb upstream 5.0kb upstream 5000 false Scaffold542: 8705-13704 Capsella grandiflora
Cagra.0542s0001 5.0kb downstream 5.0kb downstream 8704 true Scaffold542: 1-8704 Capsella grandiflora
Cagra.0542s0001 5.0kb downstream 5.0kb downstream 955 false Scaffold542: 1-955 Capsella grandiflora
Cagra.0542s0001 10.0kb upstream 10.0kb upstream 17749 true Scaffold542: 956-18704 Capsella grandiflora
Cagra.0542s0001 10.0kb upstream 10.0kb upstream 10000 false Scaffold542: 8705-18704 Capsella grandiflora
Cagra.0542s0001 10.0kb downstream 10.0kb downstream 8704 true Scaffold542: 1-8704 Capsella grandiflora
Cagra.0542s0001 10.0kb downstream 10.0kb downstream 955 false Scaffold542: 1-955 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122333955 5261 Brassicaceae Singleton cluster - no MSA
123838303 5264 Brassicales-Malvales View MSA
124339544 5266 SBM View MSA
124251429 5268 Malvidae View MSA
124067905 5270 Rosid View MSA
123752884 5271 Pentapetalae View MSA
122793476 5272 Eudicot View MSA
122051091 5273 Angiosperm View MSA
121349302 5274 Embryophyte View MSA
123428156 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain