Gene : Cagra.0534s0009 C. grandiflora v1.1
Defline:  (1 of 2) PTHR11945:SF169 - MADS-BOX FAMILY PROTEIN Genomic Order:  9
Name:  ? Cagra.0534s0009 Secondary Identifier:  ? PAC:28907666
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0534s0009 0.5kb upstream 0.5kb upstream 3388 true Scaffold534: 46047-49434 Capsella grandiflora
Cagra.0534s0009 0.5kb upstream 0.5kb upstream 500 false Scaffold534: 48935-49434 Capsella grandiflora
Cagra.0534s0009 0.5kb downstream 0.5kb downstream 3388 true Scaffold534: 45547-48934 Capsella grandiflora
Cagra.0534s0009 0.5kb downstream 0.5kb downstream 500 false Scaffold534: 45547-46046 Capsella grandiflora
Cagra.0534s0009 1.0kb upstream 1.0kb upstream 3888 true Scaffold534: 46047-49934 Capsella grandiflora
Cagra.0534s0009 1.0kb upstream 1.0kb upstream 1000 false Scaffold534: 48935-49934 Capsella grandiflora
Cagra.0534s0009 1.0kb downstream 1.0kb downstream 3888 true Scaffold534: 45047-48934 Capsella grandiflora
Cagra.0534s0009 1.0kb downstream 1.0kb downstream 1000 false Scaffold534: 45047-46046 Capsella grandiflora
Cagra.0534s0009 2.0kb upstream 2.0kb upstream 4888 true Scaffold534: 46047-50934 Capsella grandiflora
Cagra.0534s0009 2.0kb upstream 2.0kb upstream 2000 false Scaffold534: 48935-50934 Capsella grandiflora
Cagra.0534s0009 2.0kb downstream 2.0kb downstream 4888 true Scaffold534: 44047-48934 Capsella grandiflora
Cagra.0534s0009 2.0kb downstream 2.0kb downstream 2000 false Scaffold534: 44047-46046 Capsella grandiflora
Cagra.0534s0009 5.0kb upstream 5.0kb upstream 7888 true Scaffold534: 46047-53934 Capsella grandiflora
Cagra.0534s0009 5.0kb upstream 5.0kb upstream 5000 false Scaffold534: 48935-53934 Capsella grandiflora
Cagra.0534s0009 5.0kb downstream 5.0kb downstream 7888 true Scaffold534: 41047-48934 Capsella grandiflora
Cagra.0534s0009 5.0kb downstream 5.0kb downstream 5000 false Scaffold534: 41047-46046 Capsella grandiflora
Cagra.0534s0009 10.0kb upstream 10.0kb upstream 12888 true Scaffold534: 46047-58934 Capsella grandiflora
Cagra.0534s0009 10.0kb upstream 10.0kb upstream 10000 false Scaffold534: 48935-58934 Capsella grandiflora
Cagra.0534s0009 10.0kb downstream 10.0kb downstream 12888 true Scaffold534: 36047-48934 Capsella grandiflora
Cagra.0534s0009 10.0kb downstream 10.0kb downstream 10000 false Scaffold534: 36047-46046 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370979 5261 Brassicaceae View MSA
123840542 5264 Brassicales-Malvales View MSA
124342188 5266 SBM View MSA
124239260 5268 Malvidae View MSA
124062317 5270 Rosid View MSA
123742642 5271 Pentapetalae View MSA
122791202 5272 Eudicot View MSA
122050633 5273 Angiosperm View MSA
121350455 5274 Embryophyte View MSA
123427239 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain