Gene : Cagra.0434s0055 C. grandiflora v1.1
Defline:  (1 of 2) PTHR13856//PTHR13856:SF93 - VHS DOMAIN CONTAINING PROTEIN FAMILY Genomic Order:  55
Name:  ? Cagra.0434s0055 Secondary Identifier:  ? PAC:28897370
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0434s0055 0.5kb upstream 0.5kb upstream 3595 true Scaffold434: 198152-201746 Capsella grandiflora
Cagra.0434s0055 0.5kb upstream 0.5kb upstream 500 false Scaffold434: 198152-198651 Capsella grandiflora
Cagra.0434s0055 0.5kb downstream 0.5kb downstream 3595 true Scaffold434: 198652-202246 Capsella grandiflora
Cagra.0434s0055 0.5kb downstream 0.5kb downstream 500 false Scaffold434: 201747-202246 Capsella grandiflora
Cagra.0434s0055 1.0kb upstream 1.0kb upstream 4095 true Scaffold434: 197652-201746 Capsella grandiflora
Cagra.0434s0055 1.0kb upstream 1.0kb upstream 1000 false Scaffold434: 197652-198651 Capsella grandiflora
Cagra.0434s0055 1.0kb downstream 1.0kb downstream 4095 true Scaffold434: 198652-202746 Capsella grandiflora
Cagra.0434s0055 1.0kb downstream 1.0kb downstream 1000 false Scaffold434: 201747-202746 Capsella grandiflora
Cagra.0434s0055 2.0kb upstream 2.0kb upstream 5095 true Scaffold434: 196652-201746 Capsella grandiflora
Cagra.0434s0055 2.0kb upstream 2.0kb upstream 2000 false Scaffold434: 196652-198651 Capsella grandiflora
Cagra.0434s0055 2.0kb downstream 2.0kb downstream 5095 true Scaffold434: 198652-203746 Capsella grandiflora
Cagra.0434s0055 2.0kb downstream 2.0kb downstream 2000 false Scaffold434: 201747-203746 Capsella grandiflora
Cagra.0434s0055 5.0kb upstream 5.0kb upstream 8095 true Scaffold434: 193652-201746 Capsella grandiflora
Cagra.0434s0055 5.0kb upstream 5.0kb upstream 5000 false Scaffold434: 193652-198651 Capsella grandiflora
Cagra.0434s0055 5.0kb downstream 5.0kb downstream 8095 true Scaffold434: 198652-206746 Capsella grandiflora
Cagra.0434s0055 5.0kb downstream 5.0kb downstream 5000 false Scaffold434: 201747-206746 Capsella grandiflora
Cagra.0434s0055 10.0kb upstream 10.0kb upstream 13095 true Scaffold434: 188652-201746 Capsella grandiflora
Cagra.0434s0055 10.0kb upstream 10.0kb upstream 10000 false Scaffold434: 188652-198651 Capsella grandiflora
Cagra.0434s0055 10.0kb downstream 10.0kb downstream 13095 true Scaffold434: 198652-211746 Capsella grandiflora
Cagra.0434s0055 10.0kb downstream 10.0kb downstream 10000 false Scaffold434: 201747-211746 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360210 5261 Brassicaceae View MSA
123833666 5264 Brassicales-Malvales View MSA
124340636 5266 SBM View MSA
124239478 5268 Malvidae View MSA
124062688 5270 Rosid View MSA
123746960 5271 Pentapetalae View MSA
122785601 5272 Eudicot View MSA
122046025 5273 Angiosperm View MSA
121345678 5274 Embryophyte View MSA
123380253 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain