Gene : Cagra.0483s0039 C. grandiflora v1.1
Defline:  (1 of 1) PTHR12725//PTHR12725:SF73 - HALOACID DEHALOGENASE-LIKE HYDROLASE Genomic Order:  39
Name:  ? Cagra.0483s0039 Secondary Identifier:  ? PAC:28900408
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-7204 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0483s0039 0.5kb upstream 0.5kb upstream 1694 true Scaffold483: 123156-124849 Capsella grandiflora
Cagra.0483s0039 0.5kb upstream 0.5kb upstream 500 false Scaffold483: 123156-123655 Capsella grandiflora
Cagra.0483s0039 0.5kb downstream 0.5kb downstream 1694 true Scaffold483: 123656-125349 Capsella grandiflora
Cagra.0483s0039 0.5kb downstream 0.5kb downstream 500 false Scaffold483: 124850-125349 Capsella grandiflora
Cagra.0483s0039 1.0kb upstream 1.0kb upstream 2194 true Scaffold483: 122656-124849 Capsella grandiflora
Cagra.0483s0039 1.0kb upstream 1.0kb upstream 1000 false Scaffold483: 122656-123655 Capsella grandiflora
Cagra.0483s0039 1.0kb downstream 1.0kb downstream 2194 true Scaffold483: 123656-125849 Capsella grandiflora
Cagra.0483s0039 1.0kb downstream 1.0kb downstream 1000 false Scaffold483: 124850-125849 Capsella grandiflora
Cagra.0483s0039 2.0kb upstream 2.0kb upstream 3194 true Scaffold483: 121656-124849 Capsella grandiflora
Cagra.0483s0039 2.0kb upstream 2.0kb upstream 2000 false Scaffold483: 121656-123655 Capsella grandiflora
Cagra.0483s0039 2.0kb downstream 2.0kb downstream 3194 true Scaffold483: 123656-126849 Capsella grandiflora
Cagra.0483s0039 2.0kb downstream 2.0kb downstream 2000 false Scaffold483: 124850-126849 Capsella grandiflora
Cagra.0483s0039 5.0kb upstream 5.0kb upstream 6194 true Scaffold483: 118656-124849 Capsella grandiflora
Cagra.0483s0039 5.0kb upstream 5.0kb upstream 5000 false Scaffold483: 118656-123655 Capsella grandiflora
Cagra.0483s0039 5.0kb downstream 5.0kb downstream 6194 true Scaffold483: 123656-129849 Capsella grandiflora
Cagra.0483s0039 5.0kb downstream 5.0kb downstream 5000 false Scaffold483: 124850-129849 Capsella grandiflora
Cagra.0483s0039 10.0kb upstream 10.0kb upstream 11194 true Scaffold483: 113656-124849 Capsella grandiflora
Cagra.0483s0039 10.0kb upstream 10.0kb upstream 10000 false Scaffold483: 113656-123655 Capsella grandiflora
Cagra.0483s0039 10.0kb downstream 10.0kb downstream 11194 true Scaffold483: 123656-134849 Capsella grandiflora
Cagra.0483s0039 10.0kb downstream 10.0kb downstream 10000 false Scaffold483: 124850-134849 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122378953 5261 Brassicaceae View MSA
123837058 5264 Brassicales-Malvales View MSA
124347000 5266 SBM View MSA
124245978 5268 Malvidae View MSA
124070026 5270 Rosid View MSA
123741969 5271 Pentapetalae View MSA
122794377 5272 Eudicot View MSA
122048611 5273 Angiosperm View MSA
121348248 5274 Embryophyte View MSA
123426890 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain