Gene : Cagra.0612s0084 C. grandiflora v1.1
Defline:  (1 of 1) PTHR31689:SF0 - DIAMINOPIMELATE EPIMERASE, CHLOROPLASTIC Genomic Order:  84
Name:  ? Cagra.0612s0084 Secondary Identifier:  ? PAC:28917530
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-5097 Capsella grandiflora pathologic  
Cgrandiflora PWY-724 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0612s0084 0.5kb upstream 0.5kb upstream 2971 true Scaffold612: 302394-305364 Capsella grandiflora
Cagra.0612s0084 0.5kb upstream 0.5kb upstream 500 false Scaffold612: 302394-302893 Capsella grandiflora
Cagra.0612s0084 0.5kb downstream 0.5kb downstream 2971 true Scaffold612: 302894-305864 Capsella grandiflora
Cagra.0612s0084 0.5kb downstream 0.5kb downstream 500 false Scaffold612: 305365-305864 Capsella grandiflora
Cagra.0612s0084 1.0kb upstream 1.0kb upstream 3471 true Scaffold612: 301894-305364 Capsella grandiflora
Cagra.0612s0084 1.0kb upstream 1.0kb upstream 1000 false Scaffold612: 301894-302893 Capsella grandiflora
Cagra.0612s0084 1.0kb downstream 1.0kb downstream 3471 true Scaffold612: 302894-306364 Capsella grandiflora
Cagra.0612s0084 1.0kb downstream 1.0kb downstream 1000 false Scaffold612: 305365-306364 Capsella grandiflora
Cagra.0612s0084 2.0kb upstream 2.0kb upstream 4471 true Scaffold612: 300894-305364 Capsella grandiflora
Cagra.0612s0084 2.0kb upstream 2.0kb upstream 2000 false Scaffold612: 300894-302893 Capsella grandiflora
Cagra.0612s0084 2.0kb downstream 2.0kb downstream 4471 true Scaffold612: 302894-307364 Capsella grandiflora
Cagra.0612s0084 2.0kb downstream 2.0kb downstream 2000 false Scaffold612: 305365-307364 Capsella grandiflora
Cagra.0612s0084 5.0kb upstream 5.0kb upstream 7471 true Scaffold612: 297894-305364 Capsella grandiflora
Cagra.0612s0084 5.0kb upstream 5.0kb upstream 5000 false Scaffold612: 297894-302893 Capsella grandiflora
Cagra.0612s0084 5.0kb downstream 5.0kb downstream 7471 true Scaffold612: 302894-310364 Capsella grandiflora
Cagra.0612s0084 5.0kb downstream 5.0kb downstream 5000 false Scaffold612: 305365-310364 Capsella grandiflora
Cagra.0612s0084 10.0kb upstream 10.0kb upstream 12471 true Scaffold612: 292894-305364 Capsella grandiflora
Cagra.0612s0084 10.0kb upstream 10.0kb upstream 10000 false Scaffold612: 292894-302893 Capsella grandiflora
Cagra.0612s0084 10.0kb downstream 10.0kb downstream 12471 true Scaffold612: 302894-315364 Capsella grandiflora
Cagra.0612s0084 10.0kb downstream 10.0kb downstream 10000 false Scaffold612: 305365-315364 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373276 5261 Brassicaceae View MSA
123838616 5264 Brassicales-Malvales View MSA
124341400 5266 SBM View MSA
124243364 5268 Malvidae View MSA
124061653 5270 Rosid View MSA
123740208 5271 Pentapetalae View MSA
122785704 5272 Eudicot View MSA
122047257 5273 Angiosperm View MSA
121347599 5274 Embryophyte View MSA
123423863 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain