Gene : Cagra.0622s0006 C. grandiflora v1.1
Defline:  (1 of 3) PTHR22937//PTHR22937:SF53 - RING FINGER CONTAINING PROTEIN Genomic Order:  6
Name:  ? Cagra.0622s0006 Secondary Identifier:  ? PAC:28895729
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0622s0006 0.5kb upstream 0.5kb upstream 2663 true Scaffold622: 30379-33041 Capsella grandiflora
Cagra.0622s0006 0.5kb upstream 0.5kb upstream 500 false Scaffold622: 30379-30878 Capsella grandiflora
Cagra.0622s0006 0.5kb downstream 0.5kb downstream 2663 true Scaffold622: 30879-33541 Capsella grandiflora
Cagra.0622s0006 0.5kb downstream 0.5kb downstream 500 false Scaffold622: 33042-33541 Capsella grandiflora
Cagra.0622s0006 1.0kb upstream 1.0kb upstream 3163 true Scaffold622: 29879-33041 Capsella grandiflora
Cagra.0622s0006 1.0kb upstream 1.0kb upstream 1000 false Scaffold622: 29879-30878 Capsella grandiflora
Cagra.0622s0006 1.0kb downstream 1.0kb downstream 3163 true Scaffold622: 30879-34041 Capsella grandiflora
Cagra.0622s0006 1.0kb downstream 1.0kb downstream 1000 false Scaffold622: 33042-34041 Capsella grandiflora
Cagra.0622s0006 2.0kb upstream 2.0kb upstream 4163 true Scaffold622: 28879-33041 Capsella grandiflora
Cagra.0622s0006 2.0kb upstream 2.0kb upstream 2000 false Scaffold622: 28879-30878 Capsella grandiflora
Cagra.0622s0006 2.0kb downstream 2.0kb downstream 4163 true Scaffold622: 30879-35041 Capsella grandiflora
Cagra.0622s0006 2.0kb downstream 2.0kb downstream 2000 false Scaffold622: 33042-35041 Capsella grandiflora
Cagra.0622s0006 5.0kb upstream 5.0kb upstream 7163 true Scaffold622: 25879-33041 Capsella grandiflora
Cagra.0622s0006 5.0kb upstream 5.0kb upstream 5000 false Scaffold622: 25879-30878 Capsella grandiflora
Cagra.0622s0006 5.0kb downstream 5.0kb downstream 7163 true Scaffold622: 30879-38041 Capsella grandiflora
Cagra.0622s0006 5.0kb downstream 5.0kb downstream 5000 false Scaffold622: 33042-38041 Capsella grandiflora
Cagra.0622s0006 10.0kb upstream 10.0kb upstream 12163 true Scaffold622: 20879-33041 Capsella grandiflora
Cagra.0622s0006 10.0kb upstream 10.0kb upstream 10000 false Scaffold622: 20879-30878 Capsella grandiflora
Cagra.0622s0006 10.0kb downstream 10.0kb downstream 12163 true Scaffold622: 30879-43041 Capsella grandiflora
Cagra.0622s0006 10.0kb downstream 10.0kb downstream 10000 false Scaffold622: 33042-43041 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369102 5261 Brassicaceae View MSA
123840235 5264 Brassicales-Malvales View MSA
124341525 5266 SBM View MSA
124242288 5268 Malvidae View MSA
124062589 5270 Rosid View MSA
123746879 5271 Pentapetalae View MSA
122795364 5272 Eudicot View MSA
122045356 5273 Angiosperm View MSA
123429130 5275 Viridiplantae View MSA
121351500 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain