Gene : Cagra.0608s0011 C. grandiflora v1.1
Defline:  (1 of 12) PF05627 - Cleavage site for pathogenic type III effector avirulence factor Avr (AvrRpt-cleavage) Genomic Order:  11
Name:  ? Cagra.0608s0011 Secondary Identifier:  ? PAC:28894757
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0608s0011 0.5kb upstream 0.5kb upstream 915 true Scaffold608: 43393-44307 Capsella grandiflora
Cagra.0608s0011 0.5kb upstream 0.5kb upstream 500 false Scaffold608: 43393-43892 Capsella grandiflora
Cagra.0608s0011 0.5kb downstream 0.5kb downstream 915 true Scaffold608: 43893-44807 Capsella grandiflora
Cagra.0608s0011 0.5kb downstream 0.5kb downstream 500 false Scaffold608: 44308-44807 Capsella grandiflora
Cagra.0608s0011 1.0kb upstream 1.0kb upstream 1415 true Scaffold608: 42893-44307 Capsella grandiflora
Cagra.0608s0011 1.0kb upstream 1.0kb upstream 1000 false Scaffold608: 42893-43892 Capsella grandiflora
Cagra.0608s0011 1.0kb downstream 1.0kb downstream 1415 true Scaffold608: 43893-45307 Capsella grandiflora
Cagra.0608s0011 1.0kb downstream 1.0kb downstream 1000 false Scaffold608: 44308-45307 Capsella grandiflora
Cagra.0608s0011 2.0kb upstream 2.0kb upstream 2415 true Scaffold608: 41893-44307 Capsella grandiflora
Cagra.0608s0011 2.0kb upstream 2.0kb upstream 2000 false Scaffold608: 41893-43892 Capsella grandiflora
Cagra.0608s0011 2.0kb downstream 2.0kb downstream 2415 true Scaffold608: 43893-46307 Capsella grandiflora
Cagra.0608s0011 2.0kb downstream 2.0kb downstream 2000 false Scaffold608: 44308-46307 Capsella grandiflora
Cagra.0608s0011 5.0kb upstream 5.0kb upstream 5415 true Scaffold608: 38893-44307 Capsella grandiflora
Cagra.0608s0011 5.0kb upstream 5.0kb upstream 5000 false Scaffold608: 38893-43892 Capsella grandiflora
Cagra.0608s0011 5.0kb downstream 5.0kb downstream 5415 true Scaffold608: 43893-49307 Capsella grandiflora
Cagra.0608s0011 5.0kb downstream 5.0kb downstream 5000 false Scaffold608: 44308-49307 Capsella grandiflora
Cagra.0608s0011 10.0kb upstream 10.0kb upstream 10415 true Scaffold608: 33893-44307 Capsella grandiflora
Cagra.0608s0011 10.0kb upstream 10.0kb upstream 10000 false Scaffold608: 33893-43892 Capsella grandiflora
Cagra.0608s0011 10.0kb downstream 10.0kb downstream 10415 true Scaffold608: 43893-54307 Capsella grandiflora
Cagra.0608s0011 10.0kb downstream 10.0kb downstream 10000 false Scaffold608: 44308-54307 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376328 5261 Brassicaceae View MSA
123839959 5264 Brassicales-Malvales View MSA
124345918 5266 SBM View MSA
124248769 5268 Malvidae View MSA
124074284 5270 Rosid View MSA
123751462 5271 Pentapetalae View MSA
122795351 5272 Eudicot View MSA
122048962 5273 Angiosperm View MSA
121311190 5274 Embryophyte View MSA
123348519 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain